A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
549.1
nTPM
Monaco:
137.1
nTPM
Schmiedel:
221.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
549.1
HPA sample
nTPM
Memory B-cell nTPM: 549.1
Samples: 6
Max nTPM: 649.6
Min nTPM: 451.1
P10809_1017
539.1
P10809_1025
517.0
P10809_1044
451.1
P10809_1063
577.4
P10809_1092
560.5
P10809_1105
649.6
Naive B-cell nTPM: 502.5
Samples: 6
Max nTPM: 691.6
Min nTPM: 338.0
P10809_1011
456.3
P10809_1029
489.9
P10809_1048
338.0
P10809_1067
562.5
P10809_1091
476.6
P10809_1104
691.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
137.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 137.2
Samples: 4
Max nTPM: 187.9
Min nTPM: 107.7
RHH5310_R3677
114.2
RHH5218_R3590
107.7
RHH5247_R3619
187.9
RHH5276_R3648
138.8
Naive B-cell nTPM: 134.8
Samples: 4
Max nTPM: 171.7
Min nTPM: 86.6
RHH5308_R3675
151.8
RHH5216_R3588
86.6
RHH5245_R3617
171.7
RHH5274_R3646
128.9
Non-switched memory B-cell nTPM: 124.2
Samples: 4
Max nTPM: 160.2
Min nTPM: 75.1
RHH5309_R3676
124.1
RHH5217_R3589
160.2
RHH5246_R3618
75.1
RHH5275_R3647
137.5
Plasmablast nTPM: 83.2
Samples: 4
Max nTPM: 100.4
Min nTPM: 54.9
RHH5312_R3679
100.4
RHH5220_R3592
54.9
RHH5249_R3621
84.9
RHH5278_R3650
92.6
Switched memory B-cell nTPM: 134.4
Samples: 4
Max nTPM: 158.9
Min nTPM: 113.9
RHH5311_R3678
113.9
RHH5219_R3591
158.9
RHH5248_R3620
135.8
RHH5277_R3649
128.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
221.7
Schmiedel sample id
TPM
Naive B-cell TPM: 221.7
Samples: 91
Max TPM: 296.5
Min TPM: 147.4
B_CELL_NAIVE_1
296.5
B_CELL_NAIVE_2
295.2
B_CELL_NAIVE_3
291.5
B_CELL_NAIVE_4
288.1
B_CELL_NAIVE_5
284.0
B_CELL_NAIVE_6
280.6
B_CELL_NAIVE_7
270.6
B_CELL_NAIVE_8
264.5
B_CELL_NAIVE_9
260.6
B_CELL_NAIVE_10
256.0
B_CELL_NAIVE_11
255.7
B_CELL_NAIVE_12
251.2
B_CELL_NAIVE_13
250.7
B_CELL_NAIVE_14
250.0
B_CELL_NAIVE_15
249.1
B_CELL_NAIVE_16
248.8
B_CELL_NAIVE_17
247.1
B_CELL_NAIVE_18
244.5
B_CELL_NAIVE_19
244.0
B_CELL_NAIVE_20
242.8
B_CELL_NAIVE_21
241.9
B_CELL_NAIVE_22
239.2
B_CELL_NAIVE_23
238.1
B_CELL_NAIVE_24
237.4
B_CELL_NAIVE_25
236.7
B_CELL_NAIVE_26
236.7
B_CELL_NAIVE_27
235.3
B_CELL_NAIVE_28
234.7
B_CELL_NAIVE_29
234.1
B_CELL_NAIVE_30
233.4
B_CELL_NAIVE_31
232.2
B_CELL_NAIVE_32
232.1
B_CELL_NAIVE_33
231.8
B_CELL_NAIVE_34
231.8
B_CELL_NAIVE_35
231.6
B_CELL_NAIVE_36
231.4
B_CELL_NAIVE_37
230.5
B_CELL_NAIVE_38
228.1
B_CELL_NAIVE_39
226.3
B_CELL_NAIVE_40
225.2
B_CELL_NAIVE_41
221.1
B_CELL_NAIVE_42
220.7
B_CELL_NAIVE_43
219.3
B_CELL_NAIVE_44
218.5
B_CELL_NAIVE_45
217.5
B_CELL_NAIVE_46
217.1
B_CELL_NAIVE_47
216.1
B_CELL_NAIVE_48
215.9
B_CELL_NAIVE_49
215.4
B_CELL_NAIVE_50
214.8
B_CELL_NAIVE_51
214.7
B_CELL_NAIVE_52
212.5
B_CELL_NAIVE_53
212.3
B_CELL_NAIVE_54
211.0
B_CELL_NAIVE_55
210.8
B_CELL_NAIVE_56
210.1
B_CELL_NAIVE_57
208.0
B_CELL_NAIVE_58
207.4
B_CELL_NAIVE_59
206.6
B_CELL_NAIVE_60
204.2
B_CELL_NAIVE_61
204.0
B_CELL_NAIVE_62
202.6
B_CELL_NAIVE_63
202.0
B_CELL_NAIVE_64
202.0
B_CELL_NAIVE_65
201.6
B_CELL_NAIVE_66
201.5
B_CELL_NAIVE_67
200.4
B_CELL_NAIVE_68
198.7
B_CELL_NAIVE_69
198.4
B_CELL_NAIVE_70
198.0
B_CELL_NAIVE_71
197.4
B_CELL_NAIVE_72
196.8
B_CELL_NAIVE_73
196.6
B_CELL_NAIVE_74
195.3
B_CELL_NAIVE_75
195.0
B_CELL_NAIVE_76
194.5
B_CELL_NAIVE_77
194.4
B_CELL_NAIVE_78
194.0
B_CELL_NAIVE_79
193.6
B_CELL_NAIVE_80
192.4
B_CELL_NAIVE_81
191.6
B_CELL_NAIVE_82
191.5
B_CELL_NAIVE_83
190.8
B_CELL_NAIVE_84
190.0
B_CELL_NAIVE_85
188.8
B_CELL_NAIVE_86
186.2
B_CELL_NAIVE_87
185.7
B_CELL_NAIVE_88
184.4
B_CELL_NAIVE_89
176.7
B_CELL_NAIVE_90
171.1
B_CELL_NAIVE_91
147.4
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