A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
338.4
nTPM
Monaco:
57.3
nTPM
Schmiedel:
126.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
338.4
HPA sample
nTPM
NK-cell nTPM: 338.4
Samples: 6
Max nTPM: 441.4
Min nTPM: 219.2
P10809_1013
389.4
P10809_1033
292.7
P10809_1052
315.6
P10809_1071
371.9
P10809_1093
219.2
P10809_1103
441.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.3
Monaco sample
nTPM
NK-cell nTPM: 57.3
Samples: 4
Max nTPM: 65.6
Min nTPM: 49.3
RHH5316_R3683
55.2
RHH5224_R3596
49.3
RHH5253_R3625
59.0
RHH5282_R3654
65.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.8
Schmiedel sample id
TPM
NK-cell TPM: 126.8
Samples: 90
Max TPM: 183.8
Min TPM: 82.7
NK_1
183.8
NK_2
182.0
NK_3
177.6
NK_4
173.2
NK_5
172.1
NK_6
167.6
NK_7
164.6
NK_8
162.4
NK_9
162.1
NK_10
161.3
NK_11
159.1
NK_12
158.9
NK_13
158.1
NK_14
155.6
NK_15
150.4
NK_16
148.0
NK_17
146.3
NK_18
143.4
NK_19
143.2
NK_20
142.1
NK_21
140.0
NK_22
139.7
NK_23
139.6
NK_24
139.1
NK_25
138.0
NK_26
137.3
NK_27
137.2
NK_28
136.3
NK_29
135.6
NK_30
135.4
NK_31
133.4
NK_32
133.0
NK_33
132.1
NK_34
131.1
NK_35
129.9
NK_36
128.3
NK_37
128.2
NK_38
128.0
NK_39
127.4
NK_40
127.4
NK_41
127.2
NK_42
126.9
NK_43
125.8
NK_44
125.4
NK_45
124.4
NK_46
122.7
NK_47
122.7
NK_48
122.5
NK_49
122.3
NK_50
121.9
NK_51
121.7
NK_52
121.1
NK_53
120.4
NK_54
119.4
NK_55
118.6
NK_56
118.6
NK_57
118.5
NK_58
117.4
NK_59
116.5
NK_60
116.4
NK_61
113.9
NK_62
112.0
NK_63
111.9
NK_64
111.6
NK_65
110.7
NK_66
110.6
NK_67
109.6
NK_68
109.5
NK_69
109.1
NK_70
107.0
NK_71
106.8
NK_72
106.4
NK_73
105.8
NK_74
105.8
NK_75
105.8
NK_76
103.6
NK_77
103.4
NK_78
102.9
NK_79
102.7
NK_80
101.0
NK_81
100.0
NK_82
99.3
NK_83
98.8
NK_84
97.9
NK_85
97.2
NK_86
95.8
NK_87
93.0
NK_88
89.9
NK_89
87.7
NK_90
82.7
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