A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
298.6
nTPM
Monaco:
94.1
nTPM
Schmiedel:
157.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
298.6
HPA sample
nTPM
Classical monocyte nTPM: 298.6
Samples: 6
Max nTPM: 422.5
Min nTPM: 200.4
P10809_1003
422.5
P10809_1020
258.8
P10809_1039
225.0
P10809_1058
302.6
P10809_1080
200.4
P10809_1107
382.4
Intermediate monocyte nTPM: 270.4
Samples: 6
Max nTPM: 458.2
Min nTPM: 189.8
P10809_1004
189.8
P10809_1023
279.5
P10809_1042
227.5
P10809_1061
216.7
P10809_1081
250.7
P10809_1108
458.2
Non-classical monocyte nTPM: 229.0
Samples: 5
Max nTPM: 346.1
Min nTPM: 158.8
P10809_1005
217.9
P10809_1053
189.5
P10809_1072
158.8
P10809_1082
232.6
P10809_1109
346.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.1
Monaco sample
nTPM
Classical monocyte nTPM: 94.1
Samples: 4
Max nTPM: 111.3
Min nTPM: 63.1
RHH5313_R3680
92.8
RHH5221_R3593
63.1
RHH5250_R3622
109.1
RHH5279_R3651
111.3
Intermediate monocyte nTPM: 87.9
Samples: 4
Max nTPM: 98.5
Min nTPM: 79.3
RHH5314_R3681
90.6
RHH5222_R3594
79.3
RHH5251_R3623
98.5
RHH5280_R3652
83.4
Non-classical monocyte nTPM: 73.6
Samples: 4
Max nTPM: 90.9
Min nTPM: 44.8
RHH5315_R3682
87.9
RHH5223_R3595
44.8
RHH5252_R3624
90.9
RHH5281_R3653
70.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.2
Schmiedel sample id
TPM
Classical monocyte TPM: 157.2
Samples: 91
Max TPM: 207.9
Min TPM: 111.1
MONOCYTES_1
207.9
MONOCYTES_2
196.2
MONOCYTES_3
192.8
MONOCYTES_4
191.5
MONOCYTES_5
190.8
MONOCYTES_6
190.2
MONOCYTES_7
188.4
MONOCYTES_8
188.1
MONOCYTES_9
187.8
MONOCYTES_10
186.2
MONOCYTES_11
179.1
MONOCYTES_12
177.7
MONOCYTES_13
177.2
MONOCYTES_14
175.9
MONOCYTES_15
174.7
MONOCYTES_16
174.5
MONOCYTES_17
173.7
MONOCYTES_18
170.3
MONOCYTES_19
169.6
MONOCYTES_20
169.4
MONOCYTES_21
169.4
MONOCYTES_22
168.4
MONOCYTES_23
167.8
MONOCYTES_24
166.6
MONOCYTES_25
165.5
MONOCYTES_26
165.3
MONOCYTES_27
165.3
MONOCYTES_28
164.7
MONOCYTES_29
164.6
MONOCYTES_30
164.1
MONOCYTES_31
164.1
MONOCYTES_32
163.7
MONOCYTES_33
163.3
MONOCYTES_34
163.2
MONOCYTES_35
163.1
MONOCYTES_36
163.0
MONOCYTES_37
162.8
MONOCYTES_38
162.2
MONOCYTES_39
161.9
MONOCYTES_40
160.9
MONOCYTES_41
159.6
MONOCYTES_42
158.1
MONOCYTES_43
156.3
MONOCYTES_44
155.6
MONOCYTES_45
155.6
MONOCYTES_46
154.8
MONOCYTES_47
154.7
MONOCYTES_48
154.5
MONOCYTES_49
154.5
MONOCYTES_50
154.3
MONOCYTES_51
154.2
MONOCYTES_52
154.1
MONOCYTES_53
154.1
MONOCYTES_54
153.8
MONOCYTES_55
153.8
MONOCYTES_56
153.7
MONOCYTES_57
153.7
MONOCYTES_58
151.6
MONOCYTES_59
150.3
MONOCYTES_60
150.1
MONOCYTES_61
150.0
MONOCYTES_62
148.8
MONOCYTES_63
148.6
MONOCYTES_64
148.2
MONOCYTES_65
147.8
MONOCYTES_66
147.2
MONOCYTES_67
146.6
MONOCYTES_68
146.5
MONOCYTES_69
146.3
MONOCYTES_70
146.2
MONOCYTES_71
145.7
MONOCYTES_72
144.9
MONOCYTES_73
143.9
MONOCYTES_74
141.0
MONOCYTES_75
140.4
MONOCYTES_76
140.4
MONOCYTES_77
139.8
MONOCYTES_78
139.3
MONOCYTES_79
139.2
MONOCYTES_80
134.8
MONOCYTES_81
134.6
MONOCYTES_82
133.3
MONOCYTES_83
133.2
MONOCYTES_84
128.5
MONOCYTES_85
127.5
MONOCYTES_86
125.8
MONOCYTES_87
124.5
MONOCYTES_88
123.4
MONOCYTES_89
122.7
MONOCYTES_90
115.1
MONOCYTES_91
111.1
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Non-classical monocyte TPM: 122.6
Samples: 90
Max TPM: 175.1
Min TPM: 88.8
M2_1
175.1
M2_2
173.9
M2_3
166.7
M2_4
164.5
M2_5
159.7
M2_6
154.9
M2_7
153.3
M2_8
151.3
M2_9
147.5
M2_10
147.4
M2_11
144.8
M2_12
140.6
M2_13
138.9
M2_14
138.6
M2_15
138.5
M2_16
138.4
M2_17
137.4
M2_18
136.0
M2_19
135.6
M2_20
135.1
M2_21
134.3
M2_22
133.2
M2_23
133.1
M2_24
132.8
M2_25
132.8
M2_26
132.8
M2_27
132.8
M2_28
131.1
M2_29
130.8
M2_30
130.4
M2_31
130.0
M2_32
128.9
M2_33
127.0
M2_34
125.9
M2_35
125.4
M2_36
124.5
M2_37
123.1
M2_38
123.0
M2_39
122.5
M2_40
121.8
M2_41
121.7
M2_42
120.4
M2_43
120.0
M2_44
119.7
M2_45
119.2
M2_46
119.0
M2_47
118.9
M2_48
118.6
M2_49
118.3
M2_50
117.1
M2_51
116.9
M2_52
116.1
M2_53
115.9
M2_54
115.6
M2_55
115.5
M2_56
115.2
M2_57
114.0
M2_58
113.9
M2_59
112.1
M2_60
111.8
M2_61
111.4
M2_62
111.0
M2_63
110.6
M2_64
110.4
M2_65
110.4
M2_66
110.0
M2_67
108.8
M2_68
108.7
M2_69
107.9
M2_70
107.8
M2_71
107.4
M2_72
107.1
M2_73
106.4
M2_74
105.9
M2_75
105.8
M2_76
105.5
M2_77
104.5
M2_78
104.2
M2_79
103.6
M2_80
103.3
M2_81
103.3
M2_82
103.2
M2_83
102.9
M2_84
102.2
M2_85
101.5
M2_86
101.3
M2_87
98.4
M2_88
96.8
M2_89
88.9
M2_90
88.8
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