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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • RGS2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:6.4 nTPM
Monaco:842.7 nTPM
Schmiedel:431.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

6.4
HPA sample nTPM
Memory B-cell
nTPM: 6.4
Samples: 6

Max nTPM: 16.5
Min nTPM: 3.0
P10809_1017 5.5
P10809_1025 4.2
P10809_1044 16.5
P10809_1063 4.1
P10809_1092 5.1
P10809_1105 3.0
Naive B-cell
nTPM: 3.4
Samples: 6

Max nTPM: 10.2
Min nTPM: 1.2
P10809_1011 1.2
P10809_1029 1.2
P10809_1048 10.2
P10809_1067 2.5
P10809_1091 3.0
P10809_1104 2.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

842.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 586.3
Samples: 4

Max nTPM: 780.0
Min nTPM: 428.0
RHH5310_R3677 428.0
RHH5218_R3590 780.0
RHH5247_R3619 651.5
RHH5276_R3648 485.7
Naive B-cell
nTPM: 453.7
Samples: 4

Max nTPM: 907.7
Min nTPM: 176.5
RHH5308_R3675 326.3
RHH5216_R3588 907.7
RHH5245_R3617 176.5
RHH5274_R3646 404.4
Non-switched memory B-cell
nTPM: 842.7
Samples: 4

Max nTPM: 1419.7
Min nTPM: 492.1
RHH5309_R3676 492.1
RHH5217_R3589 1419.7
RHH5246_R3618 945.7
RHH5275_R3647 513.2
Plasmablast
nTPM: 392.2
Samples: 4

Max nTPM: 692.1
Min nTPM: 176.0
RHH5312_R3679 176.0
RHH5220_R3592 692.1
RHH5249_R3621 382.5
RHH5278_R3650 318.1
Switched memory B-cell
nTPM: 385.3
Samples: 4

Max nTPM: 667.2
Min nTPM: 232.8
RHH5311_R3678 312.9
RHH5219_R3591 667.2
RHH5248_R3620 232.8
RHH5277_R3649 328.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

431.6
Schmiedel sample id TPM
Naive B-cell
TPM: 431.6
Samples: 91

Max TPM: 1135.8
Min TPM: 99.8
B_CELL_NAIVE_1 1135.8
B_CELL_NAIVE_2 937.7
B_CELL_NAIVE_3 907.9
B_CELL_NAIVE_4 838.7
B_CELL_NAIVE_5 802.5
B_CELL_NAIVE_6 785.6
B_CELL_NAIVE_7 781.0
B_CELL_NAIVE_8 771.4
B_CELL_NAIVE_9 760.2
B_CELL_NAIVE_10 751.3
B_CELL_NAIVE_11 737.6
B_CELL_NAIVE_12 701.8
B_CELL_NAIVE_13 668.2
B_CELL_NAIVE_14 655.0
B_CELL_NAIVE_15 643.3
B_CELL_NAIVE_16 630.0
B_CELL_NAIVE_17 603.8
B_CELL_NAIVE_18 583.8
B_CELL_NAIVE_19 583.0
B_CELL_NAIVE_20 565.3
B_CELL_NAIVE_21 554.8
B_CELL_NAIVE_22 542.5
B_CELL_NAIVE_23 534.0
B_CELL_NAIVE_24 531.2
B_CELL_NAIVE_25 531.1
B_CELL_NAIVE_26 530.8
B_CELL_NAIVE_27 530.2
B_CELL_NAIVE_28 521.2
B_CELL_NAIVE_29 491.6
B_CELL_NAIVE_30 479.9
B_CELL_NAIVE_31 467.4
B_CELL_NAIVE_32 466.0
B_CELL_NAIVE_33 451.6
B_CELL_NAIVE_34 448.7
B_CELL_NAIVE_35 438.0
B_CELL_NAIVE_36 430.2
B_CELL_NAIVE_37 421.0
B_CELL_NAIVE_38 416.5
B_CELL_NAIVE_39 413.3
B_CELL_NAIVE_40 406.9
B_CELL_NAIVE_41 406.7
B_CELL_NAIVE_42 405.3
B_CELL_NAIVE_43 404.5
B_CELL_NAIVE_44 398.0
B_CELL_NAIVE_45 396.2
B_CELL_NAIVE_46 388.6
B_CELL_NAIVE_47 388.5
B_CELL_NAIVE_48 380.4
B_CELL_NAIVE_49 357.9
B_CELL_NAIVE_50 357.4
B_CELL_NAIVE_51 353.4
B_CELL_NAIVE_52 353.3
B_CELL_NAIVE_53 351.8
B_CELL_NAIVE_54 345.2
B_CELL_NAIVE_55 343.6
B_CELL_NAIVE_56 340.5
B_CELL_NAIVE_57 337.8
B_CELL_NAIVE_58 327.9
B_CELL_NAIVE_59 324.4
B_CELL_NAIVE_60 323.7
B_CELL_NAIVE_61 323.5
B_CELL_NAIVE_62 319.8
B_CELL_NAIVE_63 317.1
B_CELL_NAIVE_64 315.2
B_CELL_NAIVE_65 312.8
B_CELL_NAIVE_66 312.3
B_CELL_NAIVE_67 307.8
B_CELL_NAIVE_68 291.9
B_CELL_NAIVE_69 272.1
B_CELL_NAIVE_70 265.5
B_CELL_NAIVE_71 261.3
B_CELL_NAIVE_72 259.8
B_CELL_NAIVE_73 249.6
B_CELL_NAIVE_74 241.4
B_CELL_NAIVE_75 238.9
B_CELL_NAIVE_76 237.3
B_CELL_NAIVE_77 237.0
B_CELL_NAIVE_78 228.7
B_CELL_NAIVE_79 227.7
B_CELL_NAIVE_80 225.9
B_CELL_NAIVE_81 224.3
B_CELL_NAIVE_82 215.8
B_CELL_NAIVE_83 215.2
B_CELL_NAIVE_84 210.3
B_CELL_NAIVE_85 208.7
B_CELL_NAIVE_86 204.6
B_CELL_NAIVE_87 194.6
B_CELL_NAIVE_88 193.7
B_CELL_NAIVE_89 175.0
B_CELL_NAIVE_90 153.4
B_CELL_NAIVE_91 99.8
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