A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
518.5
nTPM
Monaco:
1842.3
nTPM
Schmiedel:
2740.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
518.5
HPA sample
nTPM
Classical monocyte nTPM: 518.5
Samples: 6
Max nTPM: 732.8
Min nTPM: 307.1
P10809_1003
732.8
P10809_1020
571.8
P10809_1039
554.7
P10809_1058
419.4
P10809_1080
525.0
P10809_1107
307.1
Intermediate monocyte nTPM: 200.9
Samples: 6
Max nTPM: 267.5
Min nTPM: 101.8
P10809_1004
220.5
P10809_1023
267.5
P10809_1042
211.1
P10809_1061
200.7
P10809_1081
203.9
P10809_1108
101.8
Non-classical monocyte nTPM: 364.6
Samples: 5
Max nTPM: 557.1
Min nTPM: 256.0
P10809_1005
326.4
P10809_1053
379.3
P10809_1072
557.1
P10809_1082
304.4
P10809_1109
256.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1842.3
Monaco sample
nTPM
Classical monocyte nTPM: 1842.4
Samples: 4
Max nTPM: 2933.8
Min nTPM: 793.7
RHH5313_R3680
2703.2
RHH5221_R3593
938.7
RHH5250_R3622
793.7
RHH5279_R3651
2933.8
Intermediate monocyte nTPM: 863.8
Samples: 4
Max nTPM: 1308.8
Min nTPM: 443.1
RHH5314_R3681
1308.8
RHH5222_R3594
443.1
RHH5251_R3623
559.6
RHH5280_R3652
1143.7
Non-classical monocyte nTPM: 1182.2
Samples: 4
Max nTPM: 1385.0
Min nTPM: 928.0
RHH5315_R3682
1322.8
RHH5223_R3595
928.0
RHH5252_R3624
1092.8
RHH5281_R3653
1385.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2740.6
Schmiedel sample id
TPM
Classical monocyte TPM: 2740.6
Samples: 91
Max TPM: 5223.9
Min TPM: 1606.2
MONOCYTES_1
5223.9
MONOCYTES_2
4885.2
MONOCYTES_3
4022.1
MONOCYTES_4
3893.6
MONOCYTES_5
3680.0
MONOCYTES_6
3674.2
MONOCYTES_7
3627.2
MONOCYTES_8
3563.9
MONOCYTES_9
3529.7
MONOCYTES_10
3380.5
MONOCYTES_11
3361.5
MONOCYTES_12
3344.9
MONOCYTES_13
3302.0
MONOCYTES_14
3277.9
MONOCYTES_15
3200.3
MONOCYTES_16
3189.7
MONOCYTES_17
3163.6
MONOCYTES_18
3115.8
MONOCYTES_19
3059.7
MONOCYTES_20
3045.2
MONOCYTES_21
3039.5
MONOCYTES_22
3035.9
MONOCYTES_23
3029.9
MONOCYTES_24
2944.5
MONOCYTES_25
2939.2
MONOCYTES_26
2938.6
MONOCYTES_27
2926.2
MONOCYTES_28
2911.4
MONOCYTES_29
2903.9
MONOCYTES_30
2884.0
MONOCYTES_31
2864.0
MONOCYTES_32
2849.7
MONOCYTES_33
2837.9
MONOCYTES_34
2812.7
MONOCYTES_35
2807.1
MONOCYTES_36
2794.8
MONOCYTES_37
2793.1
MONOCYTES_38
2792.5
MONOCYTES_39
2784.8
MONOCYTES_40
2764.6
MONOCYTES_41
2760.6
MONOCYTES_42
2750.2
MONOCYTES_43
2748.9
MONOCYTES_44
2739.0
MONOCYTES_45
2722.6
MONOCYTES_46
2721.7
MONOCYTES_47
2721.5
MONOCYTES_48
2719.3
MONOCYTES_49
2679.5
MONOCYTES_50
2666.6
MONOCYTES_51
2643.7
MONOCYTES_52
2642.8
MONOCYTES_53
2635.4
MONOCYTES_54
2628.2
MONOCYTES_55
2588.9
MONOCYTES_56
2572.8
MONOCYTES_57
2564.5
MONOCYTES_58
2555.8
MONOCYTES_59
2508.0
MONOCYTES_60
2489.1
MONOCYTES_61
2484.9
MONOCYTES_62
2417.1
MONOCYTES_63
2395.1
MONOCYTES_64
2387.6
MONOCYTES_65
2383.2
MONOCYTES_66
2381.0
MONOCYTES_67
2371.7
MONOCYTES_68
2371.1
MONOCYTES_69
2368.4
MONOCYTES_70
2363.1
MONOCYTES_71
2344.8
MONOCYTES_72
2326.8
MONOCYTES_73
2306.0
MONOCYTES_74
2304.1
MONOCYTES_75
2291.8
MONOCYTES_76
2259.8
MONOCYTES_77
2221.4
MONOCYTES_78
2168.0
MONOCYTES_79
2113.7
MONOCYTES_80
2102.6
MONOCYTES_81
2089.4
MONOCYTES_82
2079.0
MONOCYTES_83
1994.8
MONOCYTES_84
1962.7
MONOCYTES_85
1940.8
MONOCYTES_86
1869.6
MONOCYTES_87
1856.7
MONOCYTES_88
1818.4
MONOCYTES_89
1794.5
MONOCYTES_90
1765.3
MONOCYTES_91
1606.2
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Non-classical monocyte TPM: 1255.5
Samples: 90
Max TPM: 2056.5
Min TPM: 754.6
M2_1
2056.5
M2_2
2010.0
M2_3
1988.3
M2_4
1951.1
M2_5
1822.7
M2_6
1820.8
M2_7
1812.9
M2_8
1800.0
M2_9
1755.3
M2_10
1717.6
M2_11
1713.0
M2_12
1666.6
M2_13
1634.5
M2_14
1560.0
M2_15
1547.5
M2_16
1537.4
M2_17
1531.6
M2_18
1511.2
M2_19
1509.8
M2_20
1491.2
M2_21
1489.7
M2_22
1479.7
M2_23
1478.8
M2_24
1470.8
M2_25
1438.1
M2_26
1429.6
M2_27
1427.8
M2_28
1412.8
M2_29
1398.5
M2_30
1398.1
M2_31
1388.9
M2_32
1386.7
M2_33
1375.4
M2_34
1339.9
M2_35
1338.7
M2_36
1329.4
M2_37
1305.1
M2_38
1301.9
M2_39
1301.2
M2_40
1274.5
M2_41
1267.5
M2_42
1264.2
M2_43
1255.6
M2_44
1255.0
M2_45
1199.6
M2_46
1164.4
M2_47
1156.2
M2_48
1139.5
M2_49
1131.8
M2_50
1118.3
M2_51
1116.1
M2_52
1112.5
M2_53
1106.7
M2_54
1098.9
M2_55
1089.8
M2_56
1080.8
M2_57
1068.7
M2_58
1067.6
M2_59
1063.5
M2_60
1061.2
M2_61
1048.7
M2_62
1037.8
M2_63
1021.8
M2_64
1012.1
M2_65
1001.4
M2_66
994.4
M2_67
992.5
M2_68
989.5
M2_69
989.0
M2_70
986.2
M2_71
982.9
M2_72
981.3
M2_73
975.1
M2_74
968.1
M2_75
963.2
M2_76
940.5
M2_77
939.7
M2_78
935.9
M2_79
918.8
M2_80
918.6
M2_81
911.8
M2_82
902.1
M2_83
878.6
M2_84
851.8
M2_85
831.8
M2_86
830.5
M2_87
829.4
M2_88
797.2
M2_89
784.6
M2_90
754.6
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