A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.8
nTPM
Monaco:
51.2
nTPM
Schmiedel:
38.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
HPA sample
nTPM
Memory B-cell nTPM: 14.3
Samples: 6
Max nTPM: 22.1
Min nTPM: 1.7
P10809_1017
15.2
P10809_1025
18.4
P10809_1044
1.7
P10809_1063
10.4
P10809_1092
17.9
P10809_1105
22.1
Naive B-cell nTPM: 15.7
Samples: 6
Max nTPM: 24.2
Min nTPM: 8.8
P10809_1011
11.3
P10809_1029
14.4
P10809_1048
24.2
P10809_1067
8.8
P10809_1091
15.7
P10809_1104
20.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 38.5
Samples: 4
Max nTPM: 50.9
Min nTPM: 33.1
RHH5310_R3677
50.9
RHH5218_R3590
36.7
RHH5247_R3619
33.1
RHH5276_R3648
33.4
Naive B-cell nTPM: 43.7
Samples: 4
Max nTPM: 54.9
Min nTPM: 30.7
RHH5308_R3675
37.8
RHH5216_R3588
51.3
RHH5245_R3617
54.9
RHH5274_R3646
30.7
Non-switched memory B-cell nTPM: 51.2
Samples: 4
Max nTPM: 62.2
Min nTPM: 44.1
RHH5309_R3676
52.4
RHH5217_R3589
62.2
RHH5246_R3618
44.1
RHH5275_R3647
45.9
Plasmablast nTPM: 25.2
Samples: 4
Max nTPM: 31.0
Min nTPM: 19.8
RHH5312_R3679
22.7
RHH5220_R3592
19.8
RHH5249_R3621
27.3
RHH5278_R3650
31.0
Switched memory B-cell nTPM: 46.2
Samples: 4
Max nTPM: 50.0
Min nTPM: 41.1
RHH5311_R3678
48.1
RHH5219_R3591
45.4
RHH5248_R3620
50.0
RHH5277_R3649
41.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.5
Schmiedel sample id
TPM
Naive B-cell TPM: 38.5
Samples: 91
Max TPM: 59.4
Min TPM: 12.3
B_CELL_NAIVE_1
59.4
B_CELL_NAIVE_2
58.2
B_CELL_NAIVE_3
56.4
B_CELL_NAIVE_4
52.8
B_CELL_NAIVE_5
52.7
B_CELL_NAIVE_6
52.6
B_CELL_NAIVE_7
52.5
B_CELL_NAIVE_8
52.5
B_CELL_NAIVE_9
52.4
B_CELL_NAIVE_10
52.1
B_CELL_NAIVE_11
51.1
B_CELL_NAIVE_12
50.5
B_CELL_NAIVE_13
49.5
B_CELL_NAIVE_14
49.2
B_CELL_NAIVE_15
48.3
B_CELL_NAIVE_16
47.5
B_CELL_NAIVE_17
47.2
B_CELL_NAIVE_18
46.4
B_CELL_NAIVE_19
46.2
B_CELL_NAIVE_20
45.7
B_CELL_NAIVE_21
45.6
B_CELL_NAIVE_22
45.2
B_CELL_NAIVE_23
44.6
B_CELL_NAIVE_24
44.5
B_CELL_NAIVE_25
44.5
B_CELL_NAIVE_26
44.4
B_CELL_NAIVE_27
44.1
B_CELL_NAIVE_28
44.0
B_CELL_NAIVE_29
43.8
B_CELL_NAIVE_30
43.7
B_CELL_NAIVE_31
43.7
B_CELL_NAIVE_32
43.5
B_CELL_NAIVE_33
43.3
B_CELL_NAIVE_34
43.1
B_CELL_NAIVE_35
42.9
B_CELL_NAIVE_36
42.5
B_CELL_NAIVE_37
42.2
B_CELL_NAIVE_38
41.6
B_CELL_NAIVE_39
41.5
B_CELL_NAIVE_40
41.4
B_CELL_NAIVE_41
40.9
B_CELL_NAIVE_42
40.5
B_CELL_NAIVE_43
40.1
B_CELL_NAIVE_44
39.9
B_CELL_NAIVE_45
39.9
B_CELL_NAIVE_46
38.9
B_CELL_NAIVE_47
38.7
B_CELL_NAIVE_48
38.4
B_CELL_NAIVE_49
38.1
B_CELL_NAIVE_50
38.0
B_CELL_NAIVE_51
38.0
B_CELL_NAIVE_52
37.9
B_CELL_NAIVE_53
37.9
B_CELL_NAIVE_54
37.8
B_CELL_NAIVE_55
37.8
B_CELL_NAIVE_56
36.9
B_CELL_NAIVE_57
36.3
B_CELL_NAIVE_58
36.3
B_CELL_NAIVE_59
36.0
B_CELL_NAIVE_60
35.9
B_CELL_NAIVE_61
35.9
B_CELL_NAIVE_62
35.2
B_CELL_NAIVE_63
35.0
B_CELL_NAIVE_64
34.9
B_CELL_NAIVE_65
34.4
B_CELL_NAIVE_66
34.1
B_CELL_NAIVE_67
33.2
B_CELL_NAIVE_68
32.9
B_CELL_NAIVE_69
32.6
B_CELL_NAIVE_70
32.0
B_CELL_NAIVE_71
31.0
B_CELL_NAIVE_72
30.7
B_CELL_NAIVE_73
29.3
B_CELL_NAIVE_74
29.0
B_CELL_NAIVE_75
28.7
B_CELL_NAIVE_76
27.7
B_CELL_NAIVE_77
27.5
B_CELL_NAIVE_78
26.6
B_CELL_NAIVE_79
26.6
B_CELL_NAIVE_80
26.6
B_CELL_NAIVE_81
25.6
B_CELL_NAIVE_82
24.7
B_CELL_NAIVE_83
24.5
B_CELL_NAIVE_84
23.9
B_CELL_NAIVE_85
22.5
B_CELL_NAIVE_86
21.5
B_CELL_NAIVE_87
16.7
B_CELL_NAIVE_88
16.2
B_CELL_NAIVE_89
16.2
B_CELL_NAIVE_90
15.2
B_CELL_NAIVE_91
12.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
