A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.5
nTPM
Monaco:
102.5
nTPM
Schmiedel:
189.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
HPA sample
nTPM
NK-cell nTPM: 26.5
Samples: 6
Max nTPM: 38.2
Min nTPM: 15.3
P10809_1013
15.3
P10809_1033
32.7
P10809_1052
38.2
P10809_1071
15.8
P10809_1093
28.1
P10809_1103
28.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.5
Monaco sample
nTPM
NK-cell nTPM: 102.5
Samples: 4
Max nTPM: 123.2
Min nTPM: 76.2
RHH5316_R3683
97.0
RHH5224_R3596
123.2
RHH5253_R3625
113.4
RHH5282_R3654
76.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
189.3
Schmiedel sample id
TPM
NK-cell TPM: 189.3
Samples: 90
Max TPM: 313.8
Min TPM: 84.0
NK_1
313.8
NK_2
298.9
NK_3
295.6
NK_4
285.3
NK_5
283.3
NK_6
282.8
NK_7
281.1
NK_8
275.2
NK_9
269.4
NK_10
267.6
NK_11
261.8
NK_12
259.0
NK_13
256.5
NK_14
246.9
NK_15
239.8
NK_16
238.4
NK_17
234.8
NK_18
233.3
NK_19
232.3
NK_20
232.1
NK_21
232.0
NK_22
231.6
NK_23
229.7
NK_24
228.8
NK_25
226.7
NK_26
225.9
NK_27
221.5
NK_28
211.6
NK_29
209.4
NK_30
208.7
NK_31
206.7
NK_32
206.6
NK_33
204.1
NK_34
202.5
NK_35
200.4
NK_36
199.8
NK_37
196.2
NK_38
195.7
NK_39
194.4
NK_40
191.7
NK_41
186.8
NK_42
186.8
NK_43
186.3
NK_44
186.0
NK_45
182.7
NK_46
181.2
NK_47
180.9
NK_48
180.6
NK_49
177.9
NK_50
177.5
NK_51
175.2
NK_52
175.0
NK_53
174.0
NK_54
173.9
NK_55
170.8
NK_56
170.4
NK_57
170.1
NK_58
169.4
NK_59
168.1
NK_60
167.9
NK_61
166.3
NK_62
163.9
NK_63
163.8
NK_64
163.7
NK_65
160.4
NK_66
158.8
NK_67
158.1
NK_68
154.7
NK_69
152.3
NK_70
149.6
NK_71
145.9
NK_72
142.7
NK_73
141.0
NK_74
135.0
NK_75
134.3
NK_76
130.5
NK_77
127.4
NK_78
126.5
NK_79
124.3
NK_80
120.8
NK_81
118.8
NK_82
118.3
NK_83
117.9
NK_84
115.8
NK_85
108.7
NK_86
108.0
NK_87
104.5
NK_88
101.9
NK_89
90.0
NK_90
84.0
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