A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
58.7
nTPM
Monaco:
171.0
nTPM
Schmiedel:
157.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.7
HPA sample
nTPM
Classical monocyte nTPM: 58.0
Samples: 6
Max nTPM: 80.9
Min nTPM: 39.3
P10809_1003
80.9
P10809_1020
67.2
P10809_1039
57.4
P10809_1058
39.3
P10809_1080
53.7
P10809_1107
49.6
Intermediate monocyte nTPM: 52.2
Samples: 6
Max nTPM: 68.4
Min nTPM: 38.7
P10809_1004
51.5
P10809_1023
50.7
P10809_1042
68.4
P10809_1061
58.7
P10809_1081
38.7
P10809_1108
45.0
Non-classical monocyte nTPM: 58.7
Samples: 5
Max nTPM: 76.7
Min nTPM: 33.5
P10809_1005
60.4
P10809_1053
76.7
P10809_1072
72.4
P10809_1082
33.5
P10809_1109
50.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.0
Monaco sample
nTPM
Classical monocyte nTPM: 122.0
Samples: 4
Max nTPM: 133.6
Min nTPM: 97.3
RHH5313_R3680
133.6
RHH5221_R3593
128.6
RHH5250_R3622
97.3
RHH5279_R3651
128.6
Intermediate monocyte nTPM: 152.6
Samples: 4
Max nTPM: 191.8
Min nTPM: 120.6
RHH5314_R3681
133.9
RHH5222_R3594
191.8
RHH5251_R3623
120.6
RHH5280_R3652
164.2
Non-classical monocyte nTPM: 171.1
Samples: 4
Max nTPM: 196.2
Min nTPM: 131.7
RHH5315_R3682
163.3
RHH5223_R3595
193.0
RHH5252_R3624
131.7
RHH5281_R3653
196.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.4
Schmiedel sample id
TPM
Classical monocyte TPM: 95.6
Samples: 91
Max TPM: 140.9
Min TPM: 58.9
MONOCYTES_1
140.9
MONOCYTES_2
123.9
MONOCYTES_3
122.4
MONOCYTES_4
122.2
MONOCYTES_5
122.1
MONOCYTES_6
120.3
MONOCYTES_7
119.2
MONOCYTES_8
117.8
MONOCYTES_9
116.5
MONOCYTES_10
115.7
MONOCYTES_11
115.0
MONOCYTES_12
115.0
MONOCYTES_13
113.8
MONOCYTES_14
113.0
MONOCYTES_15
111.7
MONOCYTES_16
111.5
MONOCYTES_17
110.0
MONOCYTES_18
109.9
MONOCYTES_19
109.6
MONOCYTES_20
108.3
MONOCYTES_21
108.2
MONOCYTES_22
106.7
MONOCYTES_23
106.6
MONOCYTES_24
106.0
MONOCYTES_25
105.8
MONOCYTES_26
104.6
MONOCYTES_27
104.3
MONOCYTES_28
103.3
MONOCYTES_29
103.1
MONOCYTES_30
102.8
MONOCYTES_31
101.9
MONOCYTES_32
101.9
MONOCYTES_33
101.5
MONOCYTES_34
101.5
MONOCYTES_35
101.4
MONOCYTES_36
101.2
MONOCYTES_37
100.4
MONOCYTES_38
100.1
MONOCYTES_39
100.0
MONOCYTES_40
99.9
MONOCYTES_41
99.8
MONOCYTES_42
99.3
MONOCYTES_43
98.7
MONOCYTES_44
98.6
MONOCYTES_45
96.8
MONOCYTES_46
96.8
MONOCYTES_47
95.4
MONOCYTES_48
95.4
MONOCYTES_49
94.9
MONOCYTES_50
94.8
MONOCYTES_51
94.6
MONOCYTES_52
94.5
MONOCYTES_53
94.3
MONOCYTES_54
93.5
MONOCYTES_55
92.9
MONOCYTES_56
91.5
MONOCYTES_57
91.4
MONOCYTES_58
89.3
MONOCYTES_59
89.1
MONOCYTES_60
88.5
MONOCYTES_61
88.4
MONOCYTES_62
87.6
MONOCYTES_63
87.3
MONOCYTES_64
87.3
MONOCYTES_65
87.0
MONOCYTES_66
85.9
MONOCYTES_67
85.3
MONOCYTES_68
84.9
MONOCYTES_69
83.9
MONOCYTES_70
83.8
MONOCYTES_71
83.3
MONOCYTES_72
82.4
MONOCYTES_73
81.2
MONOCYTES_74
81.1
MONOCYTES_75
80.6
MONOCYTES_76
79.5
MONOCYTES_77
77.1
MONOCYTES_78
76.8
MONOCYTES_79
76.7
MONOCYTES_80
76.5
MONOCYTES_81
76.4
MONOCYTES_82
76.2
MONOCYTES_83
76.0
MONOCYTES_84
69.7
MONOCYTES_85
69.5
MONOCYTES_86
68.6
MONOCYTES_87
67.6
MONOCYTES_88
66.6
MONOCYTES_89
64.8
MONOCYTES_90
59.3
MONOCYTES_91
58.9
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Non-classical monocyte TPM: 157.4
Samples: 90
Max TPM: 226.8
Min TPM: 74.0
M2_1
226.8
M2_2
219.3
M2_3
219.2
M2_4
218.5
M2_5
215.1
M2_6
214.6
M2_7
210.3
M2_8
208.8
M2_9
208.7
M2_10
208.3
M2_11
206.4
M2_12
204.2
M2_13
204.0
M2_14
202.2
M2_15
201.7
M2_16
201.5
M2_17
200.5
M2_18
199.5
M2_19
199.3
M2_20
198.8
M2_21
197.6
M2_22
194.1
M2_23
193.4
M2_24
190.2
M2_25
189.1
M2_26
187.3
M2_27
186.2
M2_28
185.9
M2_29
183.8
M2_30
182.2
M2_31
177.5
M2_32
176.9
M2_33
174.4
M2_34
170.7
M2_35
165.7
M2_36
165.3
M2_37
165.1
M2_38
164.8
M2_39
164.1
M2_40
164.0
M2_41
163.1
M2_42
161.5
M2_43
160.4
M2_44
159.9
M2_45
159.6
M2_46
158.5
M2_47
158.3
M2_48
158.0
M2_49
155.8
M2_50
152.7
M2_51
151.0
M2_52
150.4
M2_53
148.2
M2_54
147.1
M2_55
146.4
M2_56
146.4
M2_57
144.9
M2_58
144.6
M2_59
140.1
M2_60
138.8
M2_61
138.5
M2_62
136.7
M2_63
134.4
M2_64
133.4
M2_65
132.9
M2_66
132.6
M2_67
132.3
M2_68
130.8
M2_69
126.5
M2_70
123.9
M2_71
123.3
M2_72
121.8
M2_73
119.4
M2_74
117.8
M2_75
117.7
M2_76
114.7
M2_77
112.1
M2_78
109.7
M2_79
109.3
M2_80
108.5
M2_81
107.6
M2_82
107.1
M2_83
97.2
M2_84
94.1
M2_85
94.0
M2_86
88.7
M2_87
81.1
M2_88
78.4
M2_89
74.6
M2_90
74.0
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