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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RPA2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:273.6 nTPM
Monaco:305.0 nTPM
Schmiedel:63.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

273.6
HPA sample nTPM
Memory B-cell
nTPM: 273.6
Samples: 6

Max nTPM: 430.3
Min nTPM: 164.6
P10809_1017 164.6
P10809_1025 289.3
P10809_1044 430.3
P10809_1063 261.8
P10809_1092 238.0
P10809_1105 257.5
Naive B-cell
nTPM: 233.1
Samples: 6

Max nTPM: 383.2
Min nTPM: 122.5
P10809_1011 122.5
P10809_1029 254.0
P10809_1048 383.2
P10809_1067 185.1
P10809_1091 233.7
P10809_1104 220.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

305.0
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 219.7
Samples: 4

Max nTPM: 271.5
Min nTPM: 176.1
RHH5310_R3677 271.5
RHH5218_R3590 219.6
RHH5247_R3619 211.4
RHH5276_R3648 176.1
Naive B-cell
nTPM: 185.6
Samples: 4

Max nTPM: 238.6
Min nTPM: 102.6
RHH5308_R3675 195.5
RHH5216_R3588 205.6
RHH5245_R3617 102.6
RHH5274_R3646 238.6
Non-switched memory B-cell
nTPM: 244.6
Samples: 4

Max nTPM: 290.3
Min nTPM: 179.1
RHH5309_R3676 261.3
RHH5217_R3589 247.5
RHH5246_R3618 290.3
RHH5275_R3647 179.1
Plasmablast
nTPM: 212.1
Samples: 4

Max nTPM: 232.8
Min nTPM: 178.3
RHH5312_R3679 232.8
RHH5220_R3592 229.3
RHH5249_R3621 178.3
RHH5278_R3650 208.1
Switched memory B-cell
nTPM: 305.0
Samples: 4

Max nTPM: 332.0
Min nTPM: 284.6
RHH5311_R3678 332.0
RHH5219_R3591 294.8
RHH5248_R3620 308.6
RHH5277_R3649 284.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

63.3
Schmiedel sample id TPM
Naive B-cell
TPM: 63.3
Samples: 91

Max TPM: 94.9
Min TPM: 39.0
B_CELL_NAIVE_1 94.9
B_CELL_NAIVE_2 86.6
B_CELL_NAIVE_3 82.9
B_CELL_NAIVE_4 78.7
B_CELL_NAIVE_5 78.0
B_CELL_NAIVE_6 77.5
B_CELL_NAIVE_7 77.5
B_CELL_NAIVE_8 76.3
B_CELL_NAIVE_9 75.4
B_CELL_NAIVE_10 75.3
B_CELL_NAIVE_11 74.4
B_CELL_NAIVE_12 72.9
B_CELL_NAIVE_13 72.6
B_CELL_NAIVE_14 70.9
B_CELL_NAIVE_15 70.7
B_CELL_NAIVE_16 70.5
B_CELL_NAIVE_17 70.1
B_CELL_NAIVE_18 69.3
B_CELL_NAIVE_19 68.6
B_CELL_NAIVE_20 68.6
B_CELL_NAIVE_21 68.0
B_CELL_NAIVE_22 67.7
B_CELL_NAIVE_23 67.6
B_CELL_NAIVE_24 67.1
B_CELL_NAIVE_25 66.8
B_CELL_NAIVE_26 66.4
B_CELL_NAIVE_27 66.2
B_CELL_NAIVE_28 66.0
B_CELL_NAIVE_29 66.0
B_CELL_NAIVE_30 65.6
B_CELL_NAIVE_31 65.6
B_CELL_NAIVE_32 65.6
B_CELL_NAIVE_33 65.1
B_CELL_NAIVE_34 65.1
B_CELL_NAIVE_35 64.8
B_CELL_NAIVE_36 64.4
B_CELL_NAIVE_37 64.2
B_CELL_NAIVE_38 64.0
B_CELL_NAIVE_39 64.0
B_CELL_NAIVE_40 63.9
B_CELL_NAIVE_41 63.9
B_CELL_NAIVE_42 63.3
B_CELL_NAIVE_43 63.1
B_CELL_NAIVE_44 63.0
B_CELL_NAIVE_45 62.7
B_CELL_NAIVE_46 62.3
B_CELL_NAIVE_47 62.3
B_CELL_NAIVE_48 61.9
B_CELL_NAIVE_49 61.8
B_CELL_NAIVE_50 61.7
B_CELL_NAIVE_51 61.6
B_CELL_NAIVE_52 61.5
B_CELL_NAIVE_53 61.0
B_CELL_NAIVE_54 60.7
B_CELL_NAIVE_55 60.6
B_CELL_NAIVE_56 60.6
B_CELL_NAIVE_57 60.5
B_CELL_NAIVE_58 60.1
B_CELL_NAIVE_59 59.9
B_CELL_NAIVE_60 59.9
B_CELL_NAIVE_61 59.8
B_CELL_NAIVE_62 59.8
B_CELL_NAIVE_63 59.7
B_CELL_NAIVE_64 59.6
B_CELL_NAIVE_65 59.5
B_CELL_NAIVE_66 59.2
B_CELL_NAIVE_67 59.2
B_CELL_NAIVE_68 58.7
B_CELL_NAIVE_69 58.5
B_CELL_NAIVE_70 58.1
B_CELL_NAIVE_71 57.7
B_CELL_NAIVE_72 57.2
B_CELL_NAIVE_73 56.7
B_CELL_NAIVE_74 56.4
B_CELL_NAIVE_75 56.2
B_CELL_NAIVE_76 56.1
B_CELL_NAIVE_77 55.8
B_CELL_NAIVE_78 55.7
B_CELL_NAIVE_79 55.7
B_CELL_NAIVE_80 54.8
B_CELL_NAIVE_81 54.4
B_CELL_NAIVE_82 53.2
B_CELL_NAIVE_83 53.0
B_CELL_NAIVE_84 52.9
B_CELL_NAIVE_85 52.6
B_CELL_NAIVE_86 51.8
B_CELL_NAIVE_87 51.6
B_CELL_NAIVE_88 47.4
B_CELL_NAIVE_89 46.0
B_CELL_NAIVE_90 45.3
B_CELL_NAIVE_91 39.0
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