A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
295.1
nTPM
Monaco:
345.1
nTPM
Schmiedel:
187.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
295.1
HPA sample
nTPM
NK-cell nTPM: 295.1
Samples: 6
Max nTPM: 382.3
Min nTPM: 161.0
P10809_1013
161.0
P10809_1033
299.0
P10809_1052
289.2
P10809_1071
382.3
P10809_1093
371.3
P10809_1103
267.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
345.1
Monaco sample
nTPM
NK-cell nTPM: 345.1
Samples: 4
Max nTPM: 387.7
Min nTPM: 270.9
RHH5316_R3683
341.8
RHH5224_R3596
387.7
RHH5253_R3625
270.9
RHH5282_R3654
380.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
187.1
Schmiedel sample id
TPM
NK-cell TPM: 187.0
Samples: 90
Max TPM: 249.1
Min TPM: 127.4
NK_1
249.1
NK_2
239.6
NK_3
237.1
NK_4
232.1
NK_5
226.9
NK_6
226.9
NK_7
224.3
NK_8
222.2
NK_9
221.7
NK_10
220.3
NK_11
219.8
NK_12
215.8
NK_13
214.5
NK_14
213.6
NK_15
213.4
NK_16
212.6
NK_17
211.6
NK_18
211.6
NK_19
210.1
NK_20
209.6
NK_21
209.4
NK_22
209.2
NK_23
208.3
NK_24
206.7
NK_25
205.1
NK_26
202.9
NK_27
201.1
NK_28
200.7
NK_29
198.8
NK_30
196.9
NK_31
196.7
NK_32
196.0
NK_33
195.7
NK_34
195.6
NK_35
194.6
NK_36
194.5
NK_37
194.4
NK_38
193.7
NK_39
192.9
NK_40
192.6
NK_41
191.8
NK_42
190.6
NK_43
190.1
NK_44
188.9
NK_45
187.4
NK_46
186.6
NK_47
182.5
NK_48
182.5
NK_49
182.2
NK_50
181.4
NK_51
180.8
NK_52
180.2
NK_53
178.1
NK_54
177.7
NK_55
175.6
NK_56
175.6
NK_57
175.0
NK_58
174.4
NK_59
173.6
NK_60
172.9
NK_61
172.7
NK_62
172.7
NK_63
171.7
NK_64
171.0
NK_65
168.9
NK_66
168.4
NK_67
167.3
NK_68
167.1
NK_69
166.3
NK_70
165.8
NK_71
165.3
NK_72
164.9
NK_73
164.5
NK_74
163.6
NK_75
163.1
NK_76
162.6
NK_77
162.1
NK_78
161.8
NK_79
161.1
NK_80
159.5
NK_81
157.5
NK_82
153.8
NK_83
152.9
NK_84
152.7
NK_85
150.7
NK_86
150.6
NK_87
149.1
NK_88
139.5
NK_89
133.3
NK_90
127.4
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