A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
106.9
nTPM
Monaco:
194.1
nTPM
Schmiedel:
88.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.9
HPA sample
nTPM
Classical monocyte nTPM: 97.6
Samples: 6
Max nTPM: 141.3
Min nTPM: 72.7
P10809_1003
74.2
P10809_1020
130.6
P10809_1039
141.3
P10809_1058
72.7
P10809_1080
82.8
P10809_1107
83.8
Intermediate monocyte nTPM: 80.1
Samples: 6
Max nTPM: 119.2
Min nTPM: 40.3
P10809_1004
72.6
P10809_1023
119.2
P10809_1042
99.4
P10809_1061
40.3
P10809_1081
60.2
P10809_1108
88.6
Non-classical monocyte nTPM: 106.9
Samples: 5
Max nTPM: 159.5
Min nTPM: 67.3
P10809_1005
104.3
P10809_1053
159.5
P10809_1072
70.5
P10809_1082
67.3
P10809_1109
132.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
194.1
Monaco sample
nTPM
Classical monocyte nTPM: 156.6
Samples: 4
Max nTPM: 191.5
Min nTPM: 115.2
RHH5313_R3680
175.9
RHH5221_R3593
115.2
RHH5250_R3622
143.7
RHH5279_R3651
191.5
Intermediate monocyte nTPM: 165.8
Samples: 4
Max nTPM: 211.9
Min nTPM: 123.5
RHH5314_R3681
178.8
RHH5222_R3594
123.5
RHH5251_R3623
149.0
RHH5280_R3652
211.9
Non-classical monocyte nTPM: 194.1
Samples: 4
Max nTPM: 215.0
Min nTPM: 159.0
RHH5315_R3682
215.0
RHH5223_R3595
159.0
RHH5252_R3624
197.6
RHH5281_R3653
204.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.2
Schmiedel sample id
TPM
Classical monocyte TPM: 49.6
Samples: 91
Max TPM: 90.4
Min TPM: 30.2
MONOCYTES_1
90.4
MONOCYTES_2
79.2
MONOCYTES_3
77.1
MONOCYTES_4
73.4
MONOCYTES_5
70.7
MONOCYTES_6
69.9
MONOCYTES_7
69.7
MONOCYTES_8
68.8
MONOCYTES_9
66.1
MONOCYTES_10
65.2
MONOCYTES_11
64.7
MONOCYTES_12
64.3
MONOCYTES_13
63.2
MONOCYTES_14
62.7
MONOCYTES_15
62.1
MONOCYTES_16
61.1
MONOCYTES_17
60.1
MONOCYTES_18
58.9
MONOCYTES_19
58.9
MONOCYTES_20
57.8
MONOCYTES_21
55.9
MONOCYTES_22
55.0
MONOCYTES_23
54.8
MONOCYTES_24
54.6
MONOCYTES_25
54.5
MONOCYTES_26
54.4
MONOCYTES_27
53.1
MONOCYTES_28
53.0
MONOCYTES_29
52.9
MONOCYTES_30
52.0
MONOCYTES_31
51.9
MONOCYTES_32
51.8
MONOCYTES_33
51.2
MONOCYTES_34
51.2
MONOCYTES_35
51.0
MONOCYTES_36
50.9
MONOCYTES_37
49.5
MONOCYTES_38
49.4
MONOCYTES_39
49.0
MONOCYTES_40
48.8
MONOCYTES_41
48.7
MONOCYTES_42
48.6
MONOCYTES_43
48.5
MONOCYTES_44
48.2
MONOCYTES_45
47.6
MONOCYTES_46
47.4
MONOCYTES_47
47.3
MONOCYTES_48
47.1
MONOCYTES_49
46.3
MONOCYTES_50
46.1
MONOCYTES_51
46.1
MONOCYTES_52
45.8
MONOCYTES_53
45.7
MONOCYTES_54
45.5
MONOCYTES_55
45.2
MONOCYTES_56
44.8
MONOCYTES_57
43.9
MONOCYTES_58
43.8
MONOCYTES_59
43.4
MONOCYTES_60
43.1
MONOCYTES_61
43.1
MONOCYTES_62
42.8
MONOCYTES_63
42.8
MONOCYTES_64
42.7
MONOCYTES_65
42.4
MONOCYTES_66
42.3
MONOCYTES_67
42.1
MONOCYTES_68
42.0
MONOCYTES_69
41.5
MONOCYTES_70
41.1
MONOCYTES_71
41.0
MONOCYTES_72
40.9
MONOCYTES_73
40.9
MONOCYTES_74
40.8
MONOCYTES_75
40.7
MONOCYTES_76
39.9
MONOCYTES_77
39.3
MONOCYTES_78
38.5
MONOCYTES_79
38.2
MONOCYTES_80
37.7
MONOCYTES_81
37.7
MONOCYTES_82
37.2
MONOCYTES_83
37.1
MONOCYTES_84
34.9
MONOCYTES_85
34.9
MONOCYTES_86
34.8
MONOCYTES_87
34.7
MONOCYTES_88
34.6
MONOCYTES_89
34.5
MONOCYTES_90
30.4
MONOCYTES_91
30.2
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Non-classical monocyte TPM: 88.2
Samples: 90
Max TPM: 173.5
Min TPM: 52.7
M2_1
173.5
M2_2
140.8
M2_3
136.4
M2_4
124.2
M2_5
122.0
M2_6
120.5
M2_7
119.8
M2_8
119.2
M2_9
116.1
M2_10
115.4
M2_11
114.1
M2_12
112.6
M2_13
111.6
M2_14
109.3
M2_15
107.3
M2_16
104.1
M2_17
103.8
M2_18
100.9
M2_19
100.8
M2_20
100.8
M2_21
100.0
M2_22
99.8
M2_23
98.5
M2_24
98.2
M2_25
98.0
M2_26
97.7
M2_27
97.7
M2_28
97.4
M2_29
95.8
M2_30
95.6
M2_31
95.5
M2_32
94.4
M2_33
92.2
M2_34
92.2
M2_35
92.1
M2_36
91.4
M2_37
91.1
M2_38
90.7
M2_39
89.9
M2_40
89.6
M2_41
89.3
M2_42
88.1
M2_43
87.9
M2_44
87.5
M2_45
85.1
M2_46
84.3
M2_47
82.5
M2_48
82.5
M2_49
82.1
M2_50
81.4
M2_51
80.5
M2_52
80.3
M2_53
80.1
M2_54
79.7
M2_55
79.4
M2_56
79.1
M2_57
78.4
M2_58
77.9
M2_59
77.6
M2_60
77.4
M2_61
76.9
M2_62
76.3
M2_63
76.1
M2_64
74.8
M2_65
74.3
M2_66
74.1
M2_67
73.1
M2_68
72.9
M2_69
72.6
M2_70
71.6
M2_71
71.5
M2_72
71.1
M2_73
70.5
M2_74
69.6
M2_75
68.9
M2_76
68.2
M2_77
68.2
M2_78
67.9
M2_79
67.8
M2_80
67.6
M2_81
67.6
M2_82
65.3
M2_83
64.6
M2_84
64.4
M2_85
60.8
M2_86
59.9
M2_87
59.5
M2_88
57.9
M2_89
56.2
M2_90
52.7
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