A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3732.0
nTPM
Monaco:
484.2
nTPM
Schmiedel:
828.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3732.0
HPA sample
nTPM
Memory B-cell nTPM: 3732.0
Samples: 6
Max nTPM: 4298.8
Min nTPM: 2936.1
P10809_1017
3144.5
P10809_1025
4077.0
P10809_1044
2936.1
P10809_1063
4190.9
P10809_1092
3744.5
P10809_1105
4298.8
Naive B-cell nTPM: 3091.7
Samples: 6
Max nTPM: 3695.1
Min nTPM: 2233.2
P10809_1011
2233.2
P10809_1029
2893.4
P10809_1048
3276.3
P10809_1067
3354.7
P10809_1091
3097.2
P10809_1104
3695.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
484.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 484.2
Samples: 4
Max nTPM: 857.6
Min nTPM: 127.8
RHH5310_R3677
385.6
RHH5218_R3590
127.8
RHH5247_R3619
857.6
RHH5276_R3648
565.9
Naive B-cell nTPM: 388.6
Samples: 4
Max nTPM: 682.7
Min nTPM: 168.5
RHH5308_R3675
378.9
RHH5216_R3588
168.5
RHH5245_R3617
682.7
RHH5274_R3646
324.3
Non-switched memory B-cell nTPM: 339.8
Samples: 4
Max nTPM: 575.9
Min nTPM: 182.8
RHH5309_R3676
416.3
RHH5217_R3589
184.1
RHH5246_R3618
182.8
RHH5275_R3647
575.9
Plasmablast nTPM: 298.8
Samples: 4
Max nTPM: 353.6
Min nTPM: 181.4
RHH5312_R3679
353.6
RHH5220_R3592
181.4
RHH5249_R3621
307.3
RHH5278_R3650
352.8
Switched memory B-cell nTPM: 306.8
Samples: 4
Max nTPM: 439.9
Min nTPM: 161.6
RHH5311_R3678
372.9
RHH5219_R3591
252.7
RHH5248_R3620
161.6
RHH5277_R3649
439.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
828.3
Schmiedel sample id
TPM
Naive B-cell TPM: 828.3
Samples: 91
Max TPM: 1329.3
Min TPM: 556.7
B_CELL_NAIVE_1
1329.3
B_CELL_NAIVE_2
988.1
B_CELL_NAIVE_3
965.6
B_CELL_NAIVE_4
956.4
B_CELL_NAIVE_5
955.8
B_CELL_NAIVE_6
949.4
B_CELL_NAIVE_7
942.5
B_CELL_NAIVE_8
940.8
B_CELL_NAIVE_9
939.6
B_CELL_NAIVE_10
927.9
B_CELL_NAIVE_11
922.2
B_CELL_NAIVE_12
914.2
B_CELL_NAIVE_13
911.9
B_CELL_NAIVE_14
910.1
B_CELL_NAIVE_15
909.4
B_CELL_NAIVE_16
904.9
B_CELL_NAIVE_17
897.7
B_CELL_NAIVE_18
895.2
B_CELL_NAIVE_19
894.4
B_CELL_NAIVE_20
891.9
B_CELL_NAIVE_21
878.9
B_CELL_NAIVE_22
877.9
B_CELL_NAIVE_23
875.9
B_CELL_NAIVE_24
874.2
B_CELL_NAIVE_25
873.4
B_CELL_NAIVE_26
865.0
B_CELL_NAIVE_27
862.6
B_CELL_NAIVE_28
861.1
B_CELL_NAIVE_29
858.5
B_CELL_NAIVE_30
857.4
B_CELL_NAIVE_31
856.9
B_CELL_NAIVE_32
847.4
B_CELL_NAIVE_33
844.9
B_CELL_NAIVE_34
844.1
B_CELL_NAIVE_35
835.3
B_CELL_NAIVE_36
835.0
B_CELL_NAIVE_37
834.9
B_CELL_NAIVE_38
832.8
B_CELL_NAIVE_39
832.4
B_CELL_NAIVE_40
832.0
B_CELL_NAIVE_41
830.1
B_CELL_NAIVE_42
828.9
B_CELL_NAIVE_43
828.4
B_CELL_NAIVE_44
826.1
B_CELL_NAIVE_45
826.0
B_CELL_NAIVE_46
825.5
B_CELL_NAIVE_47
822.6
B_CELL_NAIVE_48
822.3
B_CELL_NAIVE_49
821.9
B_CELL_NAIVE_50
821.0
B_CELL_NAIVE_51
816.5
B_CELL_NAIVE_52
815.2
B_CELL_NAIVE_53
813.3
B_CELL_NAIVE_54
811.5
B_CELL_NAIVE_55
810.4
B_CELL_NAIVE_56
810.1
B_CELL_NAIVE_57
809.4
B_CELL_NAIVE_58
805.8
B_CELL_NAIVE_59
804.3
B_CELL_NAIVE_60
804.2
B_CELL_NAIVE_61
804.2
B_CELL_NAIVE_62
803.8
B_CELL_NAIVE_63
801.4
B_CELL_NAIVE_64
798.1
B_CELL_NAIVE_65
797.7
B_CELL_NAIVE_66
795.0
B_CELL_NAIVE_67
789.1
B_CELL_NAIVE_68
786.8
B_CELL_NAIVE_69
778.0
B_CELL_NAIVE_70
775.8
B_CELL_NAIVE_71
772.8
B_CELL_NAIVE_72
772.4
B_CELL_NAIVE_73
771.7
B_CELL_NAIVE_74
768.3
B_CELL_NAIVE_75
768.0
B_CELL_NAIVE_76
758.9
B_CELL_NAIVE_77
756.5
B_CELL_NAIVE_78
750.0
B_CELL_NAIVE_79
749.2
B_CELL_NAIVE_80
742.6
B_CELL_NAIVE_81
730.1
B_CELL_NAIVE_82
721.1
B_CELL_NAIVE_83
720.7
B_CELL_NAIVE_84
697.3
B_CELL_NAIVE_85
688.7
B_CELL_NAIVE_86
688.3
B_CELL_NAIVE_87
683.9
B_CELL_NAIVE_88
682.0
B_CELL_NAIVE_89
664.6
B_CELL_NAIVE_90
619.4
B_CELL_NAIVE_91
556.7
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