A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1288.1
nTPM
Monaco:
238.6
nTPM
Schmiedel:
448.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1288.1
HPA sample
nTPM
Classical monocyte nTPM: 1203.0
Samples: 6
Max nTPM: 1673.1
Min nTPM: 959.8
P10809_1003
1673.1
P10809_1020
1091.1
P10809_1039
973.5
P10809_1058
1173.7
P10809_1080
959.8
P10809_1107
1346.9
Intermediate monocyte nTPM: 1288.1
Samples: 6
Max nTPM: 1888.2
Min nTPM: 880.4
P10809_1004
987.3
P10809_1023
1385.6
P10809_1042
1378.9
P10809_1061
880.4
P10809_1081
1208.3
P10809_1108
1888.2
Non-classical monocyte nTPM: 1152.0
Samples: 5
Max nTPM: 1678.9
Min nTPM: 746.1
P10809_1005
1128.2
P10809_1053
1143.2
P10809_1072
746.1
P10809_1082
1063.8
P10809_1109
1678.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.6
Monaco sample
nTPM
Classical monocyte nTPM: 159.8
Samples: 4
Max nTPM: 203.7
Min nTPM: 98.6
RHH5313_R3680
203.7
RHH5221_R3593
155.3
RHH5250_R3622
98.6
RHH5279_R3651
181.5
Intermediate monocyte nTPM: 238.6
Samples: 4
Max nTPM: 320.5
Min nTPM: 153.1
RHH5314_R3681
207.1
RHH5222_R3594
320.5
RHH5251_R3623
273.6
RHH5280_R3652
153.1
Non-classical monocyte nTPM: 171.3
Samples: 4
Max nTPM: 205.4
Min nTPM: 119.3
RHH5315_R3682
205.4
RHH5223_R3595
188.6
RHH5252_R3624
171.7
RHH5281_R3653
119.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
448.2
Schmiedel sample id
TPM
Classical monocyte TPM: 448.2
Samples: 91
Max TPM: 565.4
Min TPM: 366.5
MONOCYTES_1
565.4
MONOCYTES_2
554.3
MONOCYTES_3
536.0
MONOCYTES_4
528.8
MONOCYTES_5
520.3
MONOCYTES_6
507.4
MONOCYTES_7
506.6
MONOCYTES_8
502.3
MONOCYTES_9
501.4
MONOCYTES_10
500.2
MONOCYTES_11
495.7
MONOCYTES_12
494.1
MONOCYTES_13
494.0
MONOCYTES_14
493.7
MONOCYTES_15
493.1
MONOCYTES_16
492.8
MONOCYTES_17
492.2
MONOCYTES_18
487.6
MONOCYTES_19
487.4
MONOCYTES_20
486.3
MONOCYTES_21
485.0
MONOCYTES_22
483.7
MONOCYTES_23
480.1
MONOCYTES_24
479.9
MONOCYTES_25
476.7
MONOCYTES_26
475.5
MONOCYTES_27
475.0
MONOCYTES_28
474.7
MONOCYTES_29
472.5
MONOCYTES_30
469.1
MONOCYTES_31
469.0
MONOCYTES_32
462.8
MONOCYTES_33
461.1
MONOCYTES_34
461.1
MONOCYTES_35
460.7
MONOCYTES_36
459.3
MONOCYTES_37
458.4
MONOCYTES_38
455.9
MONOCYTES_39
455.3
MONOCYTES_40
454.7
MONOCYTES_41
451.9
MONOCYTES_42
451.3
MONOCYTES_43
449.4
MONOCYTES_44
449.2
MONOCYTES_45
446.0
MONOCYTES_46
445.8
MONOCYTES_47
445.8
MONOCYTES_48
445.3
MONOCYTES_49
445.1
MONOCYTES_50
443.9
MONOCYTES_51
443.7
MONOCYTES_52
441.6
MONOCYTES_53
440.4
MONOCYTES_54
440.1
MONOCYTES_55
436.8
MONOCYTES_56
436.0
MONOCYTES_57
434.3
MONOCYTES_58
434.3
MONOCYTES_59
433.2
MONOCYTES_60
432.5
MONOCYTES_61
430.6
MONOCYTES_62
429.1
MONOCYTES_63
428.6
MONOCYTES_64
424.4
MONOCYTES_65
422.4
MONOCYTES_66
422.2
MONOCYTES_67
419.8
MONOCYTES_68
419.6
MONOCYTES_69
414.6
MONOCYTES_70
411.7
MONOCYTES_71
408.9
MONOCYTES_72
408.6
MONOCYTES_73
407.7
MONOCYTES_74
407.0
MONOCYTES_75
406.6
MONOCYTES_76
402.3
MONOCYTES_77
401.9
MONOCYTES_78
400.7
MONOCYTES_79
400.4
MONOCYTES_80
397.3
MONOCYTES_81
389.7
MONOCYTES_82
385.6
MONOCYTES_83
385.1
MONOCYTES_84
382.7
MONOCYTES_85
382.0
MONOCYTES_86
378.4
MONOCYTES_87
375.3
MONOCYTES_88
374.5
MONOCYTES_89
374.0
MONOCYTES_90
371.0
MONOCYTES_91
366.5
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Non-classical monocyte TPM: 411.7
Samples: 90
Max TPM: 568.5
Min TPM: 291.4
M2_1
568.5
M2_2
499.3
M2_3
494.4
M2_4
493.0
M2_5
477.5
M2_6
475.7
M2_7
471.5
M2_8
466.8
M2_9
462.1
M2_10
460.5
M2_11
456.2
M2_12
453.4
M2_13
453.2
M2_14
451.6
M2_15
451.0
M2_16
449.7
M2_17
448.8
M2_18
446.4
M2_19
446.0
M2_20
445.5
M2_21
441.6
M2_22
441.3
M2_23
441.1
M2_24
440.6
M2_25
440.3
M2_26
436.4
M2_27
434.1
M2_28
431.4
M2_29
428.7
M2_30
428.0
M2_31
427.9
M2_32
426.5
M2_33
426.1
M2_34
424.6
M2_35
424.1
M2_36
422.9
M2_37
422.6
M2_38
421.9
M2_39
421.3
M2_40
420.3
M2_41
420.3
M2_42
420.1
M2_43
419.2
M2_44
418.8
M2_45
414.6
M2_46
414.2
M2_47
413.6
M2_48
412.9
M2_49
411.6
M2_50
410.7
M2_51
404.5
M2_52
404.1
M2_53
401.6
M2_54
400.0
M2_55
398.7
M2_56
398.3
M2_57
398.0
M2_58
398.0
M2_59
397.3
M2_60
396.5
M2_61
394.1
M2_62
392.3
M2_63
391.9
M2_64
391.7
M2_65
388.4
M2_66
388.1
M2_67
387.8
M2_68
382.9
M2_69
382.3
M2_70
381.9
M2_71
377.6
M2_72
377.4
M2_73
370.7
M2_74
369.6
M2_75
368.6
M2_76
367.5
M2_77
367.1
M2_78
366.0
M2_79
362.7
M2_80
362.4
M2_81
357.4
M2_82
356.9
M2_83
354.8
M2_84
346.0
M2_85
345.4
M2_86
342.2
M2_87
329.1
M2_88
325.0
M2_89
304.2
M2_90
291.4
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