A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2128.4
nTPM
Monaco:
179.4
nTPM
Schmiedel:
596.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2128.4
HPA sample
nTPM
NK-cell nTPM: 2128.4
Samples: 6
Max nTPM: 2642.7
Min nTPM: 996.3
P10809_1013
1943.7
P10809_1033
2503.6
P10809_1052
2220.2
P10809_1071
2642.7
P10809_1093
996.3
P10809_1103
2464.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
179.4
Monaco sample
nTPM
NK-cell nTPM: 179.4
Samples: 4
Max nTPM: 198.0
Min nTPM: 147.6
RHH5316_R3683
198.0
RHH5224_R3596
147.6
RHH5253_R3625
190.3
RHH5282_R3654
181.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
596.7
Schmiedel sample id
TPM
NK-cell TPM: 596.7
Samples: 90
Max TPM: 822.4
Min TPM: 393.4
NK_1
822.4
NK_2
812.3
NK_3
803.9
NK_4
793.3
NK_5
785.6
NK_6
750.9
NK_7
736.5
NK_8
732.0
NK_9
714.9
NK_10
706.9
NK_11
703.2
NK_12
700.1
NK_13
688.0
NK_14
682.2
NK_15
682.1
NK_16
681.6
NK_17
680.7
NK_18
677.6
NK_19
674.3
NK_20
665.0
NK_21
663.7
NK_22
662.8
NK_23
661.9
NK_24
660.0
NK_25
653.6
NK_26
649.6
NK_27
646.5
NK_28
645.7
NK_29
643.9
NK_30
628.0
NK_31
622.5
NK_32
621.4
NK_33
616.7
NK_34
616.4
NK_35
616.3
NK_36
615.8
NK_37
611.5
NK_38
611.4
NK_39
611.0
NK_40
610.8
NK_41
610.8
NK_42
609.9
NK_43
608.0
NK_44
602.1
NK_45
596.3
NK_46
591.9
NK_47
590.7
NK_48
590.1
NK_49
589.5
NK_50
583.8
NK_51
583.5
NK_52
583.4
NK_53
582.0
NK_54
579.2
NK_55
571.1
NK_56
570.6
NK_57
567.2
NK_58
555.8
NK_59
553.8
NK_60
551.5
NK_61
547.7
NK_62
547.6
NK_63
546.5
NK_64
545.2
NK_65
542.7
NK_66
541.3
NK_67
540.4
NK_68
536.8
NK_69
535.1
NK_70
531.0
NK_71
529.1
NK_72
529.0
NK_73
511.4
NK_74
511.3
NK_75
499.9
NK_76
496.0
NK_77
493.5
NK_78
493.0
NK_79
484.2
NK_80
481.5
NK_81
476.5
NK_82
469.0
NK_83
468.1
NK_84
464.8
NK_85
457.8
NK_86
454.0
NK_87
422.4
NK_88
415.2
NK_89
400.7
NK_90
393.4
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