A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.3
nTPM
Monaco:
73.7
nTPM
Schmiedel:
67.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.3
HPA sample
nTPM
Memory B-cell nTPM: 15.0
Samples: 6
Max nTPM: 18.2
Min nTPM: 10.3
P10809_1017
12.6
P10809_1025
10.3
P10809_1044
15.1
P10809_1063
15.9
P10809_1092
17.6
P10809_1105
18.2
Naive B-cell nTPM: 15.4
Samples: 6
Max nTPM: 21.5
Min nTPM: 11.3
P10809_1011
11.3
P10809_1029
14.3
P10809_1048
14.7
P10809_1067
11.9
P10809_1091
18.5
P10809_1104
21.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 64.4
Samples: 4
Max nTPM: 77.6
Min nTPM: 52.6
RHH5310_R3677
58.4
RHH5218_R3590
52.6
RHH5247_R3619
77.6
RHH5276_R3648
69.0
Naive B-cell nTPM: 66.1
Samples: 4
Max nTPM: 82.2
Min nTPM: 59.1
RHH5308_R3675
82.2
RHH5216_R3588
59.2
RHH5245_R3617
64.0
RHH5274_R3646
59.1
Non-switched memory B-cell nTPM: 73.8
Samples: 4
Max nTPM: 102.9
Min nTPM: 50.6
RHH5309_R3676
52.8
RHH5217_R3589
50.6
RHH5246_R3618
102.9
RHH5275_R3647
88.7
Plasmablast nTPM: 37.0
Samples: 4
Max nTPM: 57.5
Min nTPM: 21.6
RHH5312_R3679
57.5
RHH5220_R3592
21.6
RHH5249_R3621
30.2
RHH5278_R3650
38.6
Switched memory B-cell nTPM: 69.5
Samples: 4
Max nTPM: 75.9
Min nTPM: 63.2
RHH5311_R3678
70.9
RHH5219_R3591
63.2
RHH5248_R3620
75.9
RHH5277_R3649
68.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.0
Schmiedel sample id
TPM
Naive B-cell TPM: 67.0
Samples: 91
Max TPM: 96.0
Min TPM: 28.0
B_CELL_NAIVE_1
96.0
B_CELL_NAIVE_2
94.1
B_CELL_NAIVE_3
92.4
B_CELL_NAIVE_4
90.9
B_CELL_NAIVE_5
88.5
B_CELL_NAIVE_6
88.4
B_CELL_NAIVE_7
88.1
B_CELL_NAIVE_8
86.0
B_CELL_NAIVE_9
85.4
B_CELL_NAIVE_10
84.9
B_CELL_NAIVE_11
84.4
B_CELL_NAIVE_12
82.7
B_CELL_NAIVE_13
82.7
B_CELL_NAIVE_14
82.5
B_CELL_NAIVE_15
82.5
B_CELL_NAIVE_16
81.3
B_CELL_NAIVE_17
80.8
B_CELL_NAIVE_18
77.2
B_CELL_NAIVE_19
76.1
B_CELL_NAIVE_20
74.9
B_CELL_NAIVE_21
73.9
B_CELL_NAIVE_22
73.8
B_CELL_NAIVE_23
73.8
B_CELL_NAIVE_24
73.7
B_CELL_NAIVE_25
73.5
B_CELL_NAIVE_26
73.0
B_CELL_NAIVE_27
72.0
B_CELL_NAIVE_28
71.7
B_CELL_NAIVE_29
71.6
B_CELL_NAIVE_30
71.1
B_CELL_NAIVE_31
70.7
B_CELL_NAIVE_32
70.6
B_CELL_NAIVE_33
70.2
B_CELL_NAIVE_34
70.0
B_CELL_NAIVE_35
69.7
B_CELL_NAIVE_36
69.6
B_CELL_NAIVE_37
69.2
B_CELL_NAIVE_38
69.2
B_CELL_NAIVE_39
68.7
B_CELL_NAIVE_40
68.2
B_CELL_NAIVE_41
68.2
B_CELL_NAIVE_42
68.1
B_CELL_NAIVE_43
67.8
B_CELL_NAIVE_44
67.0
B_CELL_NAIVE_45
66.8
B_CELL_NAIVE_46
66.3
B_CELL_NAIVE_47
65.9
B_CELL_NAIVE_48
65.9
B_CELL_NAIVE_49
65.6
B_CELL_NAIVE_50
65.4
B_CELL_NAIVE_51
65.3
B_CELL_NAIVE_52
64.8
B_CELL_NAIVE_53
64.2
B_CELL_NAIVE_54
64.0
B_CELL_NAIVE_55
63.9
B_CELL_NAIVE_56
63.4
B_CELL_NAIVE_57
63.4
B_CELL_NAIVE_58
62.7
B_CELL_NAIVE_59
62.5
B_CELL_NAIVE_60
62.4
B_CELL_NAIVE_61
61.9
B_CELL_NAIVE_62
61.7
B_CELL_NAIVE_63
61.7
B_CELL_NAIVE_64
61.6
B_CELL_NAIVE_65
60.8
B_CELL_NAIVE_66
60.7
B_CELL_NAIVE_67
60.4
B_CELL_NAIVE_68
59.6
B_CELL_NAIVE_69
59.5
B_CELL_NAIVE_70
59.0
B_CELL_NAIVE_71
58.3
B_CELL_NAIVE_72
57.4
B_CELL_NAIVE_73
57.1
B_CELL_NAIVE_74
56.7
B_CELL_NAIVE_75
55.6
B_CELL_NAIVE_76
54.0
B_CELL_NAIVE_77
53.9
B_CELL_NAIVE_78
53.5
B_CELL_NAIVE_79
53.5
B_CELL_NAIVE_80
53.4
B_CELL_NAIVE_81
53.0
B_CELL_NAIVE_82
52.5
B_CELL_NAIVE_83
52.0
B_CELL_NAIVE_84
51.4
B_CELL_NAIVE_85
50.2
B_CELL_NAIVE_86
50.0
B_CELL_NAIVE_87
47.7
B_CELL_NAIVE_88
46.8
B_CELL_NAIVE_89
44.0
B_CELL_NAIVE_90
37.6
B_CELL_NAIVE_91
28.0
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The Human Protein Atlas project is funded
