A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.4
nTPM
Monaco:
84.7
nTPM
Schmiedel:
63.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.4
HPA sample
nTPM
NK-cell nTPM: 17.4
Samples: 6
Max nTPM: 26.0
Min nTPM: 0.0
P10809_1013
19.2
P10809_1033
25.9
P10809_1052
24.7
P10809_1071
8.7
P10809_1093
0.0
P10809_1103
26.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.7
Monaco sample
nTPM
NK-cell nTPM: 84.7
Samples: 4
Max nTPM: 105.2
Min nTPM: 73.5
RHH5316_R3683
73.5
RHH5224_R3596
74.3
RHH5253_R3625
85.8
RHH5282_R3654
105.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.2
Schmiedel sample id
TPM
NK-cell TPM: 63.2
Samples: 90
Max TPM: 109.2
Min TPM: 37.1
NK_1
109.2
NK_2
99.4
NK_3
95.9
NK_4
94.0
NK_5
90.8
NK_6
89.8
NK_7
86.7
NK_8
80.5
NK_9
79.9
NK_10
76.9
NK_11
76.7
NK_12
76.6
NK_13
76.5
NK_14
76.3
NK_15
75.5
NK_16
75.0
NK_17
74.7
NK_18
74.6
NK_19
73.8
NK_20
73.5
NK_21
72.4
NK_22
71.4
NK_23
70.2
NK_24
69.4
NK_25
68.9
NK_26
68.8
NK_27
68.2
NK_28
67.2
NK_29
67.2
NK_30
67.1
NK_31
67.1
NK_32
65.6
NK_33
65.6
NK_34
65.0
NK_35
64.4
NK_36
64.1
NK_37
63.4
NK_38
63.4
NK_39
63.2
NK_40
63.2
NK_41
62.5
NK_42
62.2
NK_43
62.1
NK_44
61.9
NK_45
61.8
NK_46
60.4
NK_47
60.0
NK_48
59.7
NK_49
59.7
NK_50
59.5
NK_51
59.4
NK_52
59.2
NK_53
58.9
NK_54
58.7
NK_55
58.7
NK_56
58.6
NK_57
58.3
NK_58
57.9
NK_59
57.6
NK_60
57.2
NK_61
56.9
NK_62
56.5
NK_63
56.4
NK_64
56.4
NK_65
56.4
NK_66
56.3
NK_67
56.2
NK_68
55.2
NK_69
54.3
NK_70
54.3
NK_71
53.6
NK_72
53.3
NK_73
52.9
NK_74
52.6
NK_75
52.6
NK_76
51.2
NK_77
51.2
NK_78
51.1
NK_79
50.9
NK_80
50.2
NK_81
49.5
NK_82
48.1
NK_83
47.5
NK_84
47.1
NK_85
42.0
NK_86
40.2
NK_87
39.3
NK_88
39.0
NK_89
37.5
NK_90
37.1
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