A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.3
nTPM
Monaco:
148.1
nTPM
Schmiedel:
96.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.3
HPA sample
nTPM
Classical monocyte nTPM: 25.5
Samples: 6
Max nTPM: 29.0
Min nTPM: 22.6
P10809_1003
24.3
P10809_1020
29.0
P10809_1039
27.8
P10809_1058
23.4
P10809_1080
25.7
P10809_1107
22.6
Intermediate monocyte nTPM: 27.0
Samples: 6
Max nTPM: 33.9
Min nTPM: 17.9
P10809_1004
28.3
P10809_1023
33.9
P10809_1042
29.3
P10809_1061
29.6
P10809_1081
22.7
P10809_1108
17.9
Non-classical monocyte nTPM: 35.3
Samples: 5
Max nTPM: 63.8
Min nTPM: 21.5
P10809_1005
21.5
P10809_1053
38.9
P10809_1072
63.8
P10809_1082
25.6
P10809_1109
26.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.1
Monaco sample
nTPM
Classical monocyte nTPM: 137.9
Samples: 4
Max nTPM: 164.4
Min nTPM: 106.6
RHH5313_R3680
164.4
RHH5221_R3593
106.6
RHH5250_R3622
136.3
RHH5279_R3651
144.3
Intermediate monocyte nTPM: 115.1
Samples: 4
Max nTPM: 137.2
Min nTPM: 94.5
RHH5314_R3681
137.2
RHH5222_R3594
94.5
RHH5251_R3623
113.0
RHH5280_R3652
115.7
Non-classical monocyte nTPM: 148.2
Samples: 4
Max nTPM: 175.2
Min nTPM: 118.4
RHH5315_R3682
175.2
RHH5223_R3595
118.4
RHH5252_R3624
164.7
RHH5281_R3653
134.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.7
Schmiedel sample id
TPM
Classical monocyte TPM: 58.3
Samples: 91
Max TPM: 85.3
Min TPM: 35.9
MONOCYTES_1
85.3
MONOCYTES_2
78.7
MONOCYTES_3
78.4
MONOCYTES_4
76.1
MONOCYTES_5
75.8
MONOCYTES_6
74.6
MONOCYTES_7
74.3
MONOCYTES_8
73.2
MONOCYTES_9
71.8
MONOCYTES_10
71.4
MONOCYTES_11
70.5
MONOCYTES_12
69.3
MONOCYTES_13
69.0
MONOCYTES_14
68.3
MONOCYTES_15
67.8
MONOCYTES_16
67.5
MONOCYTES_17
67.0
MONOCYTES_18
66.3
MONOCYTES_19
65.2
MONOCYTES_20
65.2
MONOCYTES_21
65.2
MONOCYTES_22
64.0
MONOCYTES_23
63.7
MONOCYTES_24
63.3
MONOCYTES_25
62.5
MONOCYTES_26
62.4
MONOCYTES_27
62.4
MONOCYTES_28
62.1
MONOCYTES_29
61.9
MONOCYTES_30
61.9
MONOCYTES_31
61.7
MONOCYTES_32
61.6
MONOCYTES_33
61.5
MONOCYTES_34
61.4
MONOCYTES_35
61.4
MONOCYTES_36
61.4
MONOCYTES_37
61.3
MONOCYTES_38
60.8
MONOCYTES_39
60.8
MONOCYTES_40
60.1
MONOCYTES_41
59.9
MONOCYTES_42
59.5
MONOCYTES_43
59.3
MONOCYTES_44
58.9
MONOCYTES_45
58.8
MONOCYTES_46
58.7
MONOCYTES_47
58.6
MONOCYTES_48
58.5
MONOCYTES_49
58.3
MONOCYTES_50
58.2
MONOCYTES_51
58.1
MONOCYTES_52
56.1
MONOCYTES_53
55.8
MONOCYTES_54
55.7
MONOCYTES_55
55.0
MONOCYTES_56
54.5
MONOCYTES_57
54.2
MONOCYTES_58
53.9
MONOCYTES_59
53.9
MONOCYTES_60
53.8
MONOCYTES_61
53.2
MONOCYTES_62
53.1
MONOCYTES_63
53.0
MONOCYTES_64
52.3
MONOCYTES_65
52.0
MONOCYTES_66
51.7
MONOCYTES_67
51.5
MONOCYTES_68
50.8
MONOCYTES_69
50.8
MONOCYTES_70
50.8
MONOCYTES_71
50.7
MONOCYTES_72
50.4
MONOCYTES_73
50.0
MONOCYTES_74
49.4
MONOCYTES_75
49.1
MONOCYTES_76
48.8
MONOCYTES_77
48.6
MONOCYTES_78
48.4
MONOCYTES_79
48.3
MONOCYTES_80
48.1
MONOCYTES_81
47.8
MONOCYTES_82
47.1
MONOCYTES_83
44.8
MONOCYTES_84
44.7
MONOCYTES_85
44.2
MONOCYTES_86
43.6
MONOCYTES_87
43.6
MONOCYTES_88
43.0
MONOCYTES_89
42.9
MONOCYTES_90
37.5
MONOCYTES_91
35.9
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Non-classical monocyte TPM: 96.7
Samples: 90
Max TPM: 143.7
Min TPM: 66.7
M2_1
143.7
M2_2
135.2
M2_3
128.6
M2_4
128.1
M2_5
126.0
M2_6
125.8
M2_7
125.0
M2_8
124.8
M2_9
124.0
M2_10
123.9
M2_11
123.9
M2_12
123.7
M2_13
119.5
M2_14
117.9
M2_15
117.6
M2_16
117.5
M2_17
117.4
M2_18
115.6
M2_19
113.1
M2_20
111.0
M2_21
109.0
M2_22
108.4
M2_23
107.7
M2_24
106.9
M2_25
106.2
M2_26
106.2
M2_27
105.2
M2_28
104.4
M2_29
103.5
M2_30
101.8
M2_31
101.5
M2_32
101.5
M2_33
101.0
M2_34
100.6
M2_35
100.6
M2_36
99.7
M2_37
98.8
M2_38
97.6
M2_39
97.4
M2_40
96.5
M2_41
96.0
M2_42
96.0
M2_43
95.9
M2_44
95.9
M2_45
95.5
M2_46
95.3
M2_47
94.6
M2_48
94.5
M2_49
94.2
M2_50
94.0
M2_51
93.9
M2_52
92.9
M2_53
92.5
M2_54
92.0
M2_55
90.8
M2_56
90.6
M2_57
90.1
M2_58
89.7
M2_59
88.6
M2_60
88.3
M2_61
87.1
M2_62
85.5
M2_63
85.1
M2_64
84.4
M2_65
81.4
M2_66
81.3
M2_67
80.7
M2_68
80.4
M2_69
80.2
M2_70
80.0
M2_71
80.0
M2_72
79.3
M2_73
79.3
M2_74
79.3
M2_75
78.8
M2_76
78.3
M2_77
78.2
M2_78
76.4
M2_79
76.0
M2_80
75.3
M2_81
75.1
M2_82
74.7
M2_83
73.3
M2_84
73.2
M2_85
73.1
M2_86
72.5
M2_87
70.3
M2_88
68.8
M2_89
68.6
M2_90
66.7
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