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BETA
  • SUMMARY

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  • BRAIN

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  • RPN2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:290.9 nTPM
Monaco:2112.9 nTPM
Schmiedel:123.7 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

290.9
HPA sample nTPM
Memory B-cell
nTPM: 290.9
Samples: 6

Max nTPM: 391.4
Min nTPM: 216.4
P10809_1017 254.6
P10809_1025 343.4
P10809_1044 391.4
P10809_1063 216.4
P10809_1092 304.3
P10809_1105 235.2
Naive B-cell
nTPM: 232.9
Samples: 6

Max nTPM: 449.0
Min nTPM: 110.8
P10809_1011 110.8
P10809_1029 274.0
P10809_1048 449.0
P10809_1067 130.6
P10809_1091 240.5
P10809_1104 192.2

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2112.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 345.2
Samples: 4

Max nTPM: 465.2
Min nTPM: 295.0
RHH5310_R3677 465.2
RHH5218_R3590 306.9
RHH5247_R3619 295.0
RHH5276_R3648 313.5
Naive B-cell
nTPM: 249.4
Samples: 4

Max nTPM: 324.9
Min nTPM: 217.2
RHH5308_R3675 222.1
RHH5216_R3588 324.9
RHH5245_R3617 217.2
RHH5274_R3646 233.4
Non-switched memory B-cell
nTPM: 285.9
Samples: 4

Max nTPM: 329.2
Min nTPM: 252.9
RHH5309_R3676 284.0
RHH5217_R3589 277.5
RHH5246_R3618 329.2
RHH5275_R3647 252.9
Plasmablast
nTPM: 2112.9
Samples: 4

Max nTPM: 2318.0
Min nTPM: 1907.1
RHH5312_R3679 2146.1
RHH5220_R3592 2318.0
RHH5249_R3621 1907.1
RHH5278_R3650 2080.2
Switched memory B-cell
nTPM: 288.3
Samples: 4

Max nTPM: 299.6
Min nTPM: 274.8
RHH5311_R3678 299.6
RHH5219_R3591 295.8
RHH5248_R3620 282.9
RHH5277_R3649 274.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

123.7
Schmiedel sample id TPM
Naive B-cell
TPM: 123.7
Samples: 91

Max TPM: 178.9
Min TPM: 89.6
B_CELL_NAIVE_1 178.9
B_CELL_NAIVE_2 164.0
B_CELL_NAIVE_3 153.6
B_CELL_NAIVE_4 153.2
B_CELL_NAIVE_5 150.7
B_CELL_NAIVE_6 148.1
B_CELL_NAIVE_7 147.5
B_CELL_NAIVE_8 147.2
B_CELL_NAIVE_9 145.8
B_CELL_NAIVE_10 145.0
B_CELL_NAIVE_11 142.0
B_CELL_NAIVE_12 140.6
B_CELL_NAIVE_13 138.6
B_CELL_NAIVE_14 138.3
B_CELL_NAIVE_15 138.0
B_CELL_NAIVE_16 137.2
B_CELL_NAIVE_17 137.1
B_CELL_NAIVE_18 135.7
B_CELL_NAIVE_19 134.8
B_CELL_NAIVE_20 134.3
B_CELL_NAIVE_21 134.0
B_CELL_NAIVE_22 134.0
B_CELL_NAIVE_23 133.5
B_CELL_NAIVE_24 132.6
B_CELL_NAIVE_25 132.5
B_CELL_NAIVE_26 132.4
B_CELL_NAIVE_27 132.2
B_CELL_NAIVE_28 131.5
B_CELL_NAIVE_29 129.8
B_CELL_NAIVE_30 129.8
B_CELL_NAIVE_31 129.4
B_CELL_NAIVE_32 129.2
B_CELL_NAIVE_33 128.9
B_CELL_NAIVE_34 128.9
B_CELL_NAIVE_35 128.9
B_CELL_NAIVE_36 128.7
B_CELL_NAIVE_37 128.6
B_CELL_NAIVE_38 128.2
B_CELL_NAIVE_39 127.9
B_CELL_NAIVE_40 127.6
B_CELL_NAIVE_41 126.3
B_CELL_NAIVE_42 126.3
B_CELL_NAIVE_43 125.9
B_CELL_NAIVE_44 125.9
B_CELL_NAIVE_45 123.9
B_CELL_NAIVE_46 123.8
B_CELL_NAIVE_47 123.3
B_CELL_NAIVE_48 122.8
B_CELL_NAIVE_49 122.2
B_CELL_NAIVE_50 121.9
B_CELL_NAIVE_51 121.8
B_CELL_NAIVE_52 120.9
B_CELL_NAIVE_53 120.6
B_CELL_NAIVE_54 120.6
B_CELL_NAIVE_55 119.3
B_CELL_NAIVE_56 119.1
B_CELL_NAIVE_57 118.8
B_CELL_NAIVE_58 117.5
B_CELL_NAIVE_59 117.4
B_CELL_NAIVE_60 117.3
B_CELL_NAIVE_61 116.5
B_CELL_NAIVE_62 115.6
B_CELL_NAIVE_63 114.7
B_CELL_NAIVE_64 114.4
B_CELL_NAIVE_65 114.2
B_CELL_NAIVE_66 113.7
B_CELL_NAIVE_67 113.5
B_CELL_NAIVE_68 112.9
B_CELL_NAIVE_69 112.5
B_CELL_NAIVE_70 112.5
B_CELL_NAIVE_71 112.4
B_CELL_NAIVE_72 110.5
B_CELL_NAIVE_73 110.4
B_CELL_NAIVE_74 110.3
B_CELL_NAIVE_75 109.8
B_CELL_NAIVE_76 109.2
B_CELL_NAIVE_77 108.8
B_CELL_NAIVE_78 107.6
B_CELL_NAIVE_79 107.6
B_CELL_NAIVE_80 105.5
B_CELL_NAIVE_81 105.2
B_CELL_NAIVE_82 104.6
B_CELL_NAIVE_83 104.6
B_CELL_NAIVE_84 102.4
B_CELL_NAIVE_85 98.0
B_CELL_NAIVE_86 95.7
B_CELL_NAIVE_87 95.3
B_CELL_NAIVE_88 93.1
B_CELL_NAIVE_89 90.7
B_CELL_NAIVE_90 90.7
B_CELL_NAIVE_91 89.6
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