A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
290.9
nTPM
Monaco:
2112.9
nTPM
Schmiedel:
123.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
290.9
HPA sample
nTPM
Memory B-cell nTPM: 290.9
Samples: 6
Max nTPM: 391.4
Min nTPM: 216.4
P10809_1017
254.6
P10809_1025
343.4
P10809_1044
391.4
P10809_1063
216.4
P10809_1092
304.3
P10809_1105
235.2
Naive B-cell nTPM: 232.9
Samples: 6
Max nTPM: 449.0
Min nTPM: 110.8
P10809_1011
110.8
P10809_1029
274.0
P10809_1048
449.0
P10809_1067
130.6
P10809_1091
240.5
P10809_1104
192.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2112.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 345.2
Samples: 4
Max nTPM: 465.2
Min nTPM: 295.0
RHH5310_R3677
465.2
RHH5218_R3590
306.9
RHH5247_R3619
295.0
RHH5276_R3648
313.5
Naive B-cell nTPM: 249.4
Samples: 4
Max nTPM: 324.9
Min nTPM: 217.2
RHH5308_R3675
222.1
RHH5216_R3588
324.9
RHH5245_R3617
217.2
RHH5274_R3646
233.4
Non-switched memory B-cell nTPM: 285.9
Samples: 4
Max nTPM: 329.2
Min nTPM: 252.9
RHH5309_R3676
284.0
RHH5217_R3589
277.5
RHH5246_R3618
329.2
RHH5275_R3647
252.9
Plasmablast nTPM: 2112.9
Samples: 4
Max nTPM: 2318.0
Min nTPM: 1907.1
RHH5312_R3679
2146.1
RHH5220_R3592
2318.0
RHH5249_R3621
1907.1
RHH5278_R3650
2080.2
Switched memory B-cell nTPM: 288.3
Samples: 4
Max nTPM: 299.6
Min nTPM: 274.8
RHH5311_R3678
299.6
RHH5219_R3591
295.8
RHH5248_R3620
282.9
RHH5277_R3649
274.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.7
Schmiedel sample id
TPM
Naive B-cell TPM: 123.7
Samples: 91
Max TPM: 178.9
Min TPM: 89.6
B_CELL_NAIVE_1
178.9
B_CELL_NAIVE_2
164.0
B_CELL_NAIVE_3
153.6
B_CELL_NAIVE_4
153.2
B_CELL_NAIVE_5
150.7
B_CELL_NAIVE_6
148.1
B_CELL_NAIVE_7
147.5
B_CELL_NAIVE_8
147.2
B_CELL_NAIVE_9
145.8
B_CELL_NAIVE_10
145.0
B_CELL_NAIVE_11
142.0
B_CELL_NAIVE_12
140.6
B_CELL_NAIVE_13
138.6
B_CELL_NAIVE_14
138.3
B_CELL_NAIVE_15
138.0
B_CELL_NAIVE_16
137.2
B_CELL_NAIVE_17
137.1
B_CELL_NAIVE_18
135.7
B_CELL_NAIVE_19
134.8
B_CELL_NAIVE_20
134.3
B_CELL_NAIVE_21
134.0
B_CELL_NAIVE_22
134.0
B_CELL_NAIVE_23
133.5
B_CELL_NAIVE_24
132.6
B_CELL_NAIVE_25
132.5
B_CELL_NAIVE_26
132.4
B_CELL_NAIVE_27
132.2
B_CELL_NAIVE_28
131.5
B_CELL_NAIVE_29
129.8
B_CELL_NAIVE_30
129.8
B_CELL_NAIVE_31
129.4
B_CELL_NAIVE_32
129.2
B_CELL_NAIVE_33
128.9
B_CELL_NAIVE_34
128.9
B_CELL_NAIVE_35
128.9
B_CELL_NAIVE_36
128.7
B_CELL_NAIVE_37
128.6
B_CELL_NAIVE_38
128.2
B_CELL_NAIVE_39
127.9
B_CELL_NAIVE_40
127.6
B_CELL_NAIVE_41
126.3
B_CELL_NAIVE_42
126.3
B_CELL_NAIVE_43
125.9
B_CELL_NAIVE_44
125.9
B_CELL_NAIVE_45
123.9
B_CELL_NAIVE_46
123.8
B_CELL_NAIVE_47
123.3
B_CELL_NAIVE_48
122.8
B_CELL_NAIVE_49
122.2
B_CELL_NAIVE_50
121.9
B_CELL_NAIVE_51
121.8
B_CELL_NAIVE_52
120.9
B_CELL_NAIVE_53
120.6
B_CELL_NAIVE_54
120.6
B_CELL_NAIVE_55
119.3
B_CELL_NAIVE_56
119.1
B_CELL_NAIVE_57
118.8
B_CELL_NAIVE_58
117.5
B_CELL_NAIVE_59
117.4
B_CELL_NAIVE_60
117.3
B_CELL_NAIVE_61
116.5
B_CELL_NAIVE_62
115.6
B_CELL_NAIVE_63
114.7
B_CELL_NAIVE_64
114.4
B_CELL_NAIVE_65
114.2
B_CELL_NAIVE_66
113.7
B_CELL_NAIVE_67
113.5
B_CELL_NAIVE_68
112.9
B_CELL_NAIVE_69
112.5
B_CELL_NAIVE_70
112.5
B_CELL_NAIVE_71
112.4
B_CELL_NAIVE_72
110.5
B_CELL_NAIVE_73
110.4
B_CELL_NAIVE_74
110.3
B_CELL_NAIVE_75
109.8
B_CELL_NAIVE_76
109.2
B_CELL_NAIVE_77
108.8
B_CELL_NAIVE_78
107.6
B_CELL_NAIVE_79
107.6
B_CELL_NAIVE_80
105.5
B_CELL_NAIVE_81
105.2
B_CELL_NAIVE_82
104.6
B_CELL_NAIVE_83
104.6
B_CELL_NAIVE_84
102.4
B_CELL_NAIVE_85
98.0
B_CELL_NAIVE_86
95.7
B_CELL_NAIVE_87
95.3
B_CELL_NAIVE_88
93.1
B_CELL_NAIVE_89
90.7
B_CELL_NAIVE_90
90.7
B_CELL_NAIVE_91
89.6
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