A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
398.8
nTPM
Monaco:
442.8
nTPM
Schmiedel:
308.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
398.8
HPA sample
nTPM
NK-cell nTPM: 398.8
Samples: 6
Max nTPM: 560.2
Min nTPM: 183.4
P10809_1013
183.4
P10809_1033
560.2
P10809_1052
403.6
P10809_1071
358.5
P10809_1093
493.4
P10809_1103
393.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
442.8
Monaco sample
nTPM
NK-cell nTPM: 442.8
Samples: 4
Max nTPM: 523.4
Min nTPM: 402.8
RHH5316_R3683
402.8
RHH5224_R3596
523.4
RHH5253_R3625
413.1
RHH5282_R3654
431.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
308.7
Schmiedel sample id
TPM
NK-cell TPM: 308.7
Samples: 90
Max TPM: 397.5
Min TPM: 246.2
NK_1
397.5
NK_2
374.8
NK_3
371.5
NK_4
361.0
NK_5
359.4
NK_6
359.1
NK_7
358.1
NK_8
358.0
NK_9
355.7
NK_10
354.2
NK_11
349.7
NK_12
344.0
NK_13
343.8
NK_14
342.7
NK_15
341.0
NK_16
340.8
NK_17
339.7
NK_18
339.5
NK_19
338.9
NK_20
337.5
NK_21
336.6
NK_22
334.0
NK_23
333.3
NK_24
331.6
NK_25
329.8
NK_26
328.8
NK_27
328.6
NK_28
328.0
NK_29
327.2
NK_30
324.8
NK_31
324.7
NK_32
322.5
NK_33
321.6
NK_34
320.0
NK_35
319.8
NK_36
319.4
NK_37
315.3
NK_38
312.3
NK_39
312.2
NK_40
311.2
NK_41
310.0
NK_42
308.7
NK_43
308.3
NK_44
307.8
NK_45
304.9
NK_46
304.5
NK_47
303.9
NK_48
303.6
NK_49
300.4
NK_50
299.7
NK_51
298.1
NK_52
297.4
NK_53
297.0
NK_54
296.9
NK_55
296.6
NK_56
296.6
NK_57
294.0
NK_58
293.3
NK_59
291.2
NK_60
290.6
NK_61
290.5
NK_62
290.2
NK_63
288.9
NK_64
286.9
NK_65
286.8
NK_66
285.9
NK_67
285.4
NK_68
283.8
NK_69
282.6
NK_70
281.5
NK_71
280.7
NK_72
279.9
NK_73
279.0
NK_74
279.0
NK_75
277.9
NK_76
274.9
NK_77
273.9
NK_78
270.6
NK_79
270.3
NK_80
270.0
NK_81
269.0
NK_82
265.9
NK_83
263.5
NK_84
262.4
NK_85
261.8
NK_86
261.4
NK_87
261.3
NK_88
260.8
NK_89
256.5
NK_90
246.2
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