A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
18.7
nTPM
Schmiedel:
119.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
Memory B-cell nTPM: 1.8
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.9
P10809_1017
2.5
P10809_1025
2.1
P10809_1044
1.5
P10809_1063
0.9
P10809_1092
2.0
P10809_1105
1.7
Naive B-cell nTPM: 2.1
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.8
P10809_1011
2.4
P10809_1029
2.3
P10809_1048
0.8
P10809_1067
2.9
P10809_1091
1.8
P10809_1104
2.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 12.2
Samples: 4
Max nTPM: 26.0
Min nTPM: 2.9
RHH5310_R3677
5.9
RHH5218_R3590
13.8
RHH5247_R3619
2.9
RHH5276_R3648
26.0
Naive B-cell nTPM: 15.2
Samples: 4
Max nTPM: 18.8
Min nTPM: 7.1
RHH5308_R3675
17.1
RHH5216_R3588
7.1
RHH5245_R3617
17.7
RHH5274_R3646
18.8
Non-switched memory B-cell nTPM: 13.1
Samples: 4
Max nTPM: 16.7
Min nTPM: 8.9
RHH5309_R3676
14.7
RHH5217_R3589
12.1
RHH5246_R3618
8.9
RHH5275_R3647
16.7
Plasmablast nTPM: 18.7
Samples: 4
Max nTPM: 21.7
Min nTPM: 15.4
RHH5312_R3679
19.7
RHH5220_R3592
17.8
RHH5249_R3621
15.4
RHH5278_R3650
21.7
Switched memory B-cell nTPM: 13.1
Samples: 4
Max nTPM: 22.1
Min nTPM: 6.9
RHH5311_R3678
6.9
RHH5219_R3591
22.1
RHH5248_R3620
10.3
RHH5277_R3649
13.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
119.7
Schmiedel sample id
TPM
Naive B-cell TPM: 119.7
Samples: 91
Max TPM: 165.9
Min TPM: 87.5
B_CELL_NAIVE_1
165.9
B_CELL_NAIVE_2
160.8
B_CELL_NAIVE_3
157.1
B_CELL_NAIVE_4
154.9
B_CELL_NAIVE_5
154.1
B_CELL_NAIVE_6
149.3
B_CELL_NAIVE_7
147.4
B_CELL_NAIVE_8
146.8
B_CELL_NAIVE_9
146.2
B_CELL_NAIVE_10
145.0
B_CELL_NAIVE_11
144.3
B_CELL_NAIVE_12
138.9
B_CELL_NAIVE_13
138.5
B_CELL_NAIVE_14
138.1
B_CELL_NAIVE_15
135.1
B_CELL_NAIVE_16
133.5
B_CELL_NAIVE_17
132.2
B_CELL_NAIVE_18
132.2
B_CELL_NAIVE_19
131.4
B_CELL_NAIVE_20
131.3
B_CELL_NAIVE_21
130.0
B_CELL_NAIVE_22
129.9
B_CELL_NAIVE_23
129.3
B_CELL_NAIVE_24
129.1
B_CELL_NAIVE_25
128.7
B_CELL_NAIVE_26
127.5
B_CELL_NAIVE_27
127.5
B_CELL_NAIVE_28
127.1
B_CELL_NAIVE_29
127.0
B_CELL_NAIVE_30
126.6
B_CELL_NAIVE_31
126.4
B_CELL_NAIVE_32
126.0
B_CELL_NAIVE_33
125.2
B_CELL_NAIVE_34
124.4
B_CELL_NAIVE_35
123.6
B_CELL_NAIVE_36
123.2
B_CELL_NAIVE_37
121.8
B_CELL_NAIVE_38
121.8
B_CELL_NAIVE_39
121.2
B_CELL_NAIVE_40
120.8
B_CELL_NAIVE_41
120.0
B_CELL_NAIVE_42
119.4
B_CELL_NAIVE_43
118.6
B_CELL_NAIVE_44
117.8
B_CELL_NAIVE_45
117.3
B_CELL_NAIVE_46
117.1
B_CELL_NAIVE_47
116.6
B_CELL_NAIVE_48
116.3
B_CELL_NAIVE_49
116.2
B_CELL_NAIVE_50
116.1
B_CELL_NAIVE_51
115.8
B_CELL_NAIVE_52
115.0
B_CELL_NAIVE_53
114.5
B_CELL_NAIVE_54
113.9
B_CELL_NAIVE_55
113.8
B_CELL_NAIVE_56
113.8
B_CELL_NAIVE_57
113.6
B_CELL_NAIVE_58
113.2
B_CELL_NAIVE_59
113.1
B_CELL_NAIVE_60
111.9
B_CELL_NAIVE_61
109.9
B_CELL_NAIVE_62
109.3
B_CELL_NAIVE_63
108.3
B_CELL_NAIVE_64
108.1
B_CELL_NAIVE_65
107.8
B_CELL_NAIVE_66
107.3
B_CELL_NAIVE_67
107.2
B_CELL_NAIVE_68
107.2
B_CELL_NAIVE_69
107.1
B_CELL_NAIVE_70
107.0
B_CELL_NAIVE_71
106.9
B_CELL_NAIVE_72
106.5
B_CELL_NAIVE_73
106.5
B_CELL_NAIVE_74
106.0
B_CELL_NAIVE_75
105.9
B_CELL_NAIVE_76
105.8
B_CELL_NAIVE_77
104.9
B_CELL_NAIVE_78
104.8
B_CELL_NAIVE_79
102.6
B_CELL_NAIVE_80
102.2
B_CELL_NAIVE_81
100.7
B_CELL_NAIVE_82
100.5
B_CELL_NAIVE_83
96.5
B_CELL_NAIVE_84
96.4
B_CELL_NAIVE_85
96.1
B_CELL_NAIVE_86
95.9
B_CELL_NAIVE_87
95.7
B_CELL_NAIVE_88
94.4
B_CELL_NAIVE_89
93.5
B_CELL_NAIVE_90
88.1
B_CELL_NAIVE_91
87.5
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