A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
21.4
nTPM
Schmiedel:
116.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
NK-cell nTPM: 2.4
Samples: 6
Max nTPM: 4.1
Min nTPM: 0.4
P10809_1013
3.9
P10809_1033
4.1
P10809_1052
2.1
P10809_1071
0.4
P10809_1093
0.8
P10809_1103
2.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.4
Monaco sample
nTPM
NK-cell nTPM: 21.4
Samples: 4
Max nTPM: 30.3
Min nTPM: 12.5
RHH5316_R3683
12.5
RHH5224_R3596
15.3
RHH5253_R3625
30.3
RHH5282_R3654
27.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.7
Schmiedel sample id
TPM
NK-cell TPM: 116.7
Samples: 90
Max TPM: 178.2
Min TPM: 81.9
NK_1
178.2
NK_2
169.2
NK_3
160.9
NK_4
159.7
NK_5
156.6
NK_6
154.6
NK_7
152.2
NK_8
149.7
NK_9
147.0
NK_10
144.8
NK_11
144.6
NK_12
139.1
NK_13
138.3
NK_14
135.6
NK_15
134.9
NK_16
134.4
NK_17
131.4
NK_18
131.4
NK_19
131.3
NK_20
131.1
NK_21
129.9
NK_22
129.5
NK_23
128.5
NK_24
127.0
NK_25
126.2
NK_26
125.2
NK_27
124.8
NK_28
124.8
NK_29
124.1
NK_30
122.3
NK_31
120.8
NK_32
120.7
NK_33
120.7
NK_34
120.2
NK_35
119.1
NK_36
119.0
NK_37
118.1
NK_38
118.1
NK_39
117.5
NK_40
117.3
NK_41
116.4
NK_42
115.2
NK_43
114.6
NK_44
113.8
NK_45
113.6
NK_46
113.5
NK_47
112.7
NK_48
110.8
NK_49
110.4
NK_50
110.1
NK_51
109.6
NK_52
109.4
NK_53
108.8
NK_54
108.1
NK_55
107.7
NK_56
107.5
NK_57
107.4
NK_58
106.8
NK_59
106.1
NK_60
105.6
NK_61
105.6
NK_62
105.2
NK_63
104.9
NK_64
103.2
NK_65
103.0
NK_66
102.8
NK_67
102.6
NK_68
101.6
NK_69
101.5
NK_70
101.0
NK_71
100.9
NK_72
100.2
NK_73
100.1
NK_74
98.6
NK_75
98.2
NK_76
97.8
NK_77
96.8
NK_78
96.2
NK_79
95.7
NK_80
95.2
NK_81
95.2
NK_82
95.1
NK_83
94.5
NK_84
94.4
NK_85
92.4
NK_86
92.4
NK_87
91.3
NK_88
87.4
NK_89
82.6
NK_90
81.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
