A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
16.3
nTPM
Schmiedel:
139.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.9
P10809_1003
0.9
P10809_1020
1.0
P10809_1039
0.9
P10809_1058
1.6
P10809_1080
1.2
P10809_1107
1.4
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.6
P10809_1004
1.3
P10809_1023
0.6
P10809_1042
0.9
P10809_1061
1.2
P10809_1081
1.2
P10809_1108
2.2
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.5
Min nTPM: 0.2
P10809_1005
0.8
P10809_1053
0.3
P10809_1072
0.2
P10809_1082
1.5
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
Monaco sample
nTPM
Classical monocyte nTPM: 16.3
Samples: 4
Max nTPM: 19.1
Min nTPM: 8.0
RHH5313_R3680
19.0
RHH5221_R3593
8.0
RHH5250_R3622
19.1
RHH5279_R3651
19.1
Intermediate monocyte nTPM: 15.0
Samples: 4
Max nTPM: 20.2
Min nTPM: 13.1
RHH5314_R3681
13.1
RHH5222_R3594
13.2
RHH5251_R3623
20.2
RHH5280_R3652
13.4
Non-classical monocyte nTPM: 14.5
Samples: 4
Max nTPM: 15.2
Min nTPM: 14.1
RHH5315_R3682
14.2
RHH5223_R3595
14.3
RHH5252_R3624
14.1
RHH5281_R3653
15.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
139.1
Schmiedel sample id
TPM
Classical monocyte TPM: 124.6
Samples: 91
Max TPM: 152.6
Min TPM: 91.1
MONOCYTES_1
152.6
MONOCYTES_2
152.6
MONOCYTES_3
151.3
MONOCYTES_4
149.8
MONOCYTES_5
148.2
MONOCYTES_6
147.8
MONOCYTES_7
146.8
MONOCYTES_8
146.4
MONOCYTES_9
145.6
MONOCYTES_10
144.3
MONOCYTES_11
143.9
MONOCYTES_12
143.5
MONOCYTES_13
143.0
MONOCYTES_14
141.0
MONOCYTES_15
140.4
MONOCYTES_16
139.2
MONOCYTES_17
138.8
MONOCYTES_18
137.8
MONOCYTES_19
137.2
MONOCYTES_20
136.7
MONOCYTES_21
136.2
MONOCYTES_22
135.7
MONOCYTES_23
135.4
MONOCYTES_24
135.2
MONOCYTES_25
135.2
MONOCYTES_26
135.1
MONOCYTES_27
132.9
MONOCYTES_28
132.8
MONOCYTES_29
132.8
MONOCYTES_30
132.7
MONOCYTES_31
132.6
MONOCYTES_32
132.1
MONOCYTES_33
131.5
MONOCYTES_34
131.3
MONOCYTES_35
131.1
MONOCYTES_36
131.1
MONOCYTES_37
131.0
MONOCYTES_38
130.1
MONOCYTES_39
129.0
MONOCYTES_40
129.0
MONOCYTES_41
128.0
MONOCYTES_42
126.7
MONOCYTES_43
126.3
MONOCYTES_44
125.8
MONOCYTES_45
125.1
MONOCYTES_46
125.0
MONOCYTES_47
124.1
MONOCYTES_48
123.5
MONOCYTES_49
122.4
MONOCYTES_50
122.1
MONOCYTES_51
121.7
MONOCYTES_52
121.4
MONOCYTES_53
120.3
MONOCYTES_54
120.3
MONOCYTES_55
120.2
MONOCYTES_56
119.2
MONOCYTES_57
118.6
MONOCYTES_58
117.6
MONOCYTES_59
117.6
MONOCYTES_60
117.4
MONOCYTES_61
117.2
MONOCYTES_62
117.2
MONOCYTES_63
116.6
MONOCYTES_64
115.6
MONOCYTES_65
115.3
MONOCYTES_66
115.1
MONOCYTES_67
115.0
MONOCYTES_68
113.4
MONOCYTES_69
112.0
MONOCYTES_70
111.9
MONOCYTES_71
111.1
MONOCYTES_72
110.8
MONOCYTES_73
110.7
MONOCYTES_74
110.7
MONOCYTES_75
110.0
MONOCYTES_76
109.5
MONOCYTES_77
109.0
MONOCYTES_78
108.8
MONOCYTES_79
108.7
MONOCYTES_80
107.9
MONOCYTES_81
106.5
MONOCYTES_82
105.6
MONOCYTES_83
105.4
MONOCYTES_84
105.2
MONOCYTES_85
104.1
MONOCYTES_86
102.8
MONOCYTES_87
99.6
MONOCYTES_88
98.7
MONOCYTES_89
97.6
MONOCYTES_90
94.2
MONOCYTES_91
91.1
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Non-classical monocyte TPM: 139.1
Samples: 90
Max TPM: 187.7
Min TPM: 90.6
M2_1
187.7
M2_2
182.3
M2_3
179.2
M2_4
175.3
M2_5
175.2
M2_6
167.3
M2_7
166.5
M2_8
163.2
M2_9
162.7
M2_10
160.5
M2_11
156.8
M2_12
154.9
M2_13
154.6
M2_14
154.6
M2_15
154.2
M2_16
153.5
M2_17
152.9
M2_18
151.9
M2_19
151.3
M2_20
151.2
M2_21
150.9
M2_22
148.8
M2_23
147.8
M2_24
147.5
M2_25
147.1
M2_26
146.8
M2_27
146.4
M2_28
146.2
M2_29
146.0
M2_30
145.0
M2_31
145.0
M2_32
144.4
M2_33
144.3
M2_34
144.2
M2_35
143.3
M2_36
142.3
M2_37
141.7
M2_38
140.5
M2_39
140.1
M2_40
139.9
M2_41
138.4
M2_42
138.2
M2_43
137.5
M2_44
137.1
M2_45
136.7
M2_46
135.8
M2_47
135.0
M2_48
134.7
M2_49
134.7
M2_50
134.0
M2_51
133.8
M2_52
133.7
M2_53
133.5
M2_54
133.3
M2_55
132.8
M2_56
132.7
M2_57
132.4
M2_58
132.2
M2_59
132.2
M2_60
132.0
M2_61
130.8
M2_62
130.8
M2_63
130.7
M2_64
130.4
M2_65
129.4
M2_66
129.0
M2_67
128.9
M2_68
128.2
M2_69
128.2
M2_70
127.6
M2_71
126.5
M2_72
126.3
M2_73
126.1
M2_74
124.7
M2_75
124.4
M2_76
124.2
M2_77
123.1
M2_78
122.4
M2_79
122.3
M2_80
122.3
M2_81
122.1
M2_82
120.9
M2_83
120.1
M2_84
119.0
M2_85
118.9
M2_86
115.3
M2_87
114.6
M2_88
113.5
M2_89
106.5
M2_90
90.6
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