A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
25.7
nTPM
Schmiedel:
22.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Memory B-cell nTPM: 5.9
Samples: 6
Max nTPM: 7.7
Min nTPM: 3.7
P10809_1017
4.8
P10809_1025
6.1
P10809_1044
7.6
P10809_1063
7.7
P10809_1092
3.7
P10809_1105
5.2
Naive B-cell nTPM: 4.0
Samples: 6
Max nTPM: 5.6
Min nTPM: 2.7
P10809_1011
2.7
P10809_1029
3.6
P10809_1048
5.6
P10809_1067
4.6
P10809_1091
3.8
P10809_1104
3.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 19.3
Samples: 4
Max nTPM: 22.2
Min nTPM: 17.4
RHH5310_R3677
22.2
RHH5218_R3590
19.7
RHH5247_R3619
17.4
RHH5276_R3648
17.7
Naive B-cell nTPM: 24.4
Samples: 4
Max nTPM: 42.1
Min nTPM: 14.0
RHH5308_R3675
14.0
RHH5216_R3588
42.1
RHH5245_R3617
23.7
RHH5274_R3646
17.7
Non-switched memory B-cell nTPM: 25.7
Samples: 4
Max nTPM: 31.4
Min nTPM: 22.5
RHH5309_R3676
23.8
RHH5217_R3589
25.0
RHH5246_R3618
22.5
RHH5275_R3647
31.4
Plasmablast nTPM: 17.5
Samples: 4
Max nTPM: 23.3
Min nTPM: 10.5
RHH5312_R3679
17.9
RHH5220_R3592
10.5
RHH5249_R3621
18.3
RHH5278_R3650
23.3
Switched memory B-cell nTPM: 21.9
Samples: 4
Max nTPM: 29.2
Min nTPM: 16.8
RHH5311_R3678
29.2
RHH5219_R3591
16.8
RHH5248_R3620
16.8
RHH5277_R3649
24.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.9
Schmiedel sample id
TPM
Naive B-cell TPM: 22.9
Samples: 91
Max TPM: 35.8
Min TPM: 16.8
B_CELL_NAIVE_1
35.8
B_CELL_NAIVE_2
34.9
B_CELL_NAIVE_3
33.7
B_CELL_NAIVE_4
32.1
B_CELL_NAIVE_5
31.0
B_CELL_NAIVE_6
29.9
B_CELL_NAIVE_7
28.3
B_CELL_NAIVE_8
28.2
B_CELL_NAIVE_9
27.1
B_CELL_NAIVE_10
26.9
B_CELL_NAIVE_11
26.8
B_CELL_NAIVE_12
26.7
B_CELL_NAIVE_13
26.6
B_CELL_NAIVE_14
26.5
B_CELL_NAIVE_15
26.4
B_CELL_NAIVE_16
26.1
B_CELL_NAIVE_17
25.8
B_CELL_NAIVE_18
25.7
B_CELL_NAIVE_19
25.7
B_CELL_NAIVE_20
25.3
B_CELL_NAIVE_21
25.1
B_CELL_NAIVE_22
25.0
B_CELL_NAIVE_23
24.9
B_CELL_NAIVE_24
24.9
B_CELL_NAIVE_25
24.8
B_CELL_NAIVE_26
24.6
B_CELL_NAIVE_27
24.6
B_CELL_NAIVE_28
24.6
B_CELL_NAIVE_29
24.4
B_CELL_NAIVE_30
24.4
B_CELL_NAIVE_31
24.3
B_CELL_NAIVE_32
24.2
B_CELL_NAIVE_33
24.2
B_CELL_NAIVE_34
23.7
B_CELL_NAIVE_35
23.7
B_CELL_NAIVE_36
23.7
B_CELL_NAIVE_37
23.6
B_CELL_NAIVE_38
23.6
B_CELL_NAIVE_39
23.4
B_CELL_NAIVE_40
23.3
B_CELL_NAIVE_41
23.2
B_CELL_NAIVE_42
23.1
B_CELL_NAIVE_43
22.5
B_CELL_NAIVE_44
22.4
B_CELL_NAIVE_45
22.4
B_CELL_NAIVE_46
22.3
B_CELL_NAIVE_47
22.1
B_CELL_NAIVE_48
22.0
B_CELL_NAIVE_49
22.0
B_CELL_NAIVE_50
21.9
B_CELL_NAIVE_51
21.9
B_CELL_NAIVE_52
21.4
B_CELL_NAIVE_53
21.4
B_CELL_NAIVE_54
21.3
B_CELL_NAIVE_55
21.0
B_CELL_NAIVE_56
21.0
B_CELL_NAIVE_57
21.0
B_CELL_NAIVE_58
20.9
B_CELL_NAIVE_59
20.8
B_CELL_NAIVE_60
20.8
B_CELL_NAIVE_61
20.7
B_CELL_NAIVE_62
20.7
B_CELL_NAIVE_63
20.5
B_CELL_NAIVE_64
20.4
B_CELL_NAIVE_65
20.2
B_CELL_NAIVE_66
20.1
B_CELL_NAIVE_67
20.1
B_CELL_NAIVE_68
19.9
B_CELL_NAIVE_69
19.9
B_CELL_NAIVE_70
19.9
B_CELL_NAIVE_71
19.8
B_CELL_NAIVE_72
19.6
B_CELL_NAIVE_73
19.6
B_CELL_NAIVE_74
19.5
B_CELL_NAIVE_75
19.5
B_CELL_NAIVE_76
19.4
B_CELL_NAIVE_77
19.4
B_CELL_NAIVE_78
19.3
B_CELL_NAIVE_79
19.2
B_CELL_NAIVE_80
19.0
B_CELL_NAIVE_81
18.6
B_CELL_NAIVE_82
18.6
B_CELL_NAIVE_83
18.5
B_CELL_NAIVE_84
18.5
B_CELL_NAIVE_85
17.9
B_CELL_NAIVE_86
17.9
B_CELL_NAIVE_87
17.9
B_CELL_NAIVE_88
17.3
B_CELL_NAIVE_89
17.2
B_CELL_NAIVE_90
17.1
B_CELL_NAIVE_91
16.8
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The Human Protein Atlas project is funded
