A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.4
nTPM
Monaco:
29.4
nTPM
Schmiedel:
38.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.4
HPA sample
nTPM
NK-cell nTPM: 5.4
Samples: 6
Max nTPM: 7.6
Min nTPM: 3.8
P10809_1013
7.6
P10809_1033
6.4
P10809_1052
3.8
P10809_1071
4.0
P10809_1093
3.9
P10809_1103
6.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.4
Monaco sample
nTPM
NK-cell nTPM: 29.5
Samples: 4
Max nTPM: 36.2
Min nTPM: 25.3
RHH5316_R3683
25.3
RHH5224_R3596
36.2
RHH5253_R3625
29.2
RHH5282_R3654
27.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Schmiedel sample id
TPM
NK-cell TPM: 38.4
Samples: 90
Max TPM: 66.2
Min TPM: 25.5
NK_1
66.2
NK_2
62.4
NK_3
58.5
NK_4
57.0
NK_5
55.5
NK_6
51.4
NK_7
51.1
NK_8
50.1
NK_9
48.7
NK_10
48.5
NK_11
48.0
NK_12
47.2
NK_13
46.7
NK_14
46.1
NK_15
46.0
NK_16
45.8
NK_17
45.3
NK_18
45.3
NK_19
44.5
NK_20
44.1
NK_21
43.8
NK_22
43.7
NK_23
43.6
NK_24
43.5
NK_25
43.2
NK_26
43.0
NK_27
42.9
NK_28
41.4
NK_29
41.4
NK_30
41.2
NK_31
40.6
NK_32
40.4
NK_33
39.7
NK_34
39.4
NK_35
38.8
NK_36
38.6
NK_37
38.6
NK_38
38.4
NK_39
38.1
NK_40
38.1
NK_41
37.9
NK_42
37.9
NK_43
37.9
NK_44
37.5
NK_45
37.4
NK_46
37.0
NK_47
37.0
NK_48
37.0
NK_49
36.7
NK_50
36.5
NK_51
35.7
NK_52
35.3
NK_53
35.0
NK_54
34.8
NK_55
34.7
NK_56
34.6
NK_57
34.4
NK_58
34.2
NK_59
34.1
NK_60
34.1
NK_61
33.4
NK_62
33.4
NK_63
33.2
NK_64
32.7
NK_65
32.4
NK_66
32.4
NK_67
32.3
NK_68
32.3
NK_69
32.0
NK_70
31.8
NK_71
31.8
NK_72
31.7
NK_73
31.7
NK_74
31.4
NK_75
31.3
NK_76
30.8
NK_77
30.8
NK_78
30.4
NK_79
29.4
NK_80
29.3
NK_81
29.3
NK_82
28.7
NK_83
28.7
NK_84
27.8
NK_85
27.2
NK_86
26.8
NK_87
26.7
NK_88
26.7
NK_89
26.6
NK_90
25.5
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