A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.8
nTPM
Monaco:
29.9
nTPM
Schmiedel:
36.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.8
HPA sample
nTPM
Classical monocyte nTPM: 6.2
Samples: 6
Max nTPM: 7.1
Min nTPM: 4.5
P10809_1003
6.1
P10809_1020
7.0
P10809_1039
7.1
P10809_1058
4.5
P10809_1080
6.8
P10809_1107
5.6
Intermediate monocyte nTPM: 7.2
Samples: 6
Max nTPM: 8.6
Min nTPM: 6.4
P10809_1004
6.4
P10809_1023
7.2
P10809_1042
8.6
P10809_1061
6.8
P10809_1081
7.4
P10809_1108
6.7
Non-classical monocyte nTPM: 9.8
Samples: 5
Max nTPM: 21.6
Min nTPM: 5.5
P10809_1005
5.5
P10809_1053
7.9
P10809_1072
21.6
P10809_1082
6.6
P10809_1109
7.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.9
Monaco sample
nTPM
Classical monocyte nTPM: 29.9
Samples: 4
Max nTPM: 31.2
Min nTPM: 28.1
RHH5313_R3680
29.9
RHH5221_R3593
30.3
RHH5250_R3622
28.1
RHH5279_R3651
31.2
Intermediate monocyte nTPM: 28.3
Samples: 4
Max nTPM: 31.3
Min nTPM: 25.5
RHH5314_R3681
26.0
RHH5222_R3594
31.3
RHH5251_R3623
25.5
RHH5280_R3652
30.3
Non-classical monocyte nTPM: 29.9
Samples: 4
Max nTPM: 36.5
Min nTPM: 24.5
RHH5315_R3682
24.5
RHH5223_R3595
36.5
RHH5252_R3624
30.9
RHH5281_R3653
27.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.0
Schmiedel sample id
TPM
Classical monocyte TPM: 27.3
Samples: 91
Max TPM: 36.7
Min TPM: 18.2
MONOCYTES_1
36.7
MONOCYTES_2
35.0
MONOCYTES_3
34.6
MONOCYTES_4
34.2
MONOCYTES_5
33.7
MONOCYTES_6
32.7
MONOCYTES_7
32.4
MONOCYTES_8
32.3
MONOCYTES_9
32.2
MONOCYTES_10
32.0
MONOCYTES_11
32.0
MONOCYTES_12
31.9
MONOCYTES_13
31.7
MONOCYTES_14
31.1
MONOCYTES_15
30.8
MONOCYTES_16
30.6
MONOCYTES_17
30.3
MONOCYTES_18
30.3
MONOCYTES_19
30.0
MONOCYTES_20
29.9
MONOCYTES_21
29.9
MONOCYTES_22
29.8
MONOCYTES_23
29.7
MONOCYTES_24
29.6
MONOCYTES_25
29.2
MONOCYTES_26
29.2
MONOCYTES_27
29.1
MONOCYTES_28
29.1
MONOCYTES_29
29.0
MONOCYTES_30
28.8
MONOCYTES_31
28.7
MONOCYTES_32
28.6
MONOCYTES_33
28.6
MONOCYTES_34
28.5
MONOCYTES_35
28.5
MONOCYTES_36
28.5
MONOCYTES_37
28.3
MONOCYTES_38
28.2
MONOCYTES_39
28.0
MONOCYTES_40
28.0
MONOCYTES_41
27.9
MONOCYTES_42
27.9
MONOCYTES_43
27.8
MONOCYTES_44
27.4
MONOCYTES_45
27.3
MONOCYTES_46
27.2
MONOCYTES_47
26.8
MONOCYTES_48
26.8
MONOCYTES_49
26.8
MONOCYTES_50
26.7
MONOCYTES_51
26.5
MONOCYTES_52
26.5
MONOCYTES_53
26.4
MONOCYTES_54
26.3
MONOCYTES_55
26.3
MONOCYTES_56
26.1
MONOCYTES_57
25.9
MONOCYTES_58
25.8
MONOCYTES_59
25.8
MONOCYTES_60
25.8
MONOCYTES_61
25.8
MONOCYTES_62
25.5
MONOCYTES_63
25.5
MONOCYTES_64
25.4
MONOCYTES_65
25.4
MONOCYTES_66
25.1
MONOCYTES_67
25.0
MONOCYTES_68
24.6
MONOCYTES_69
24.5
MONOCYTES_70
24.5
MONOCYTES_71
24.4
MONOCYTES_72
24.3
MONOCYTES_73
24.1
MONOCYTES_74
24.0
MONOCYTES_75
24.0
MONOCYTES_76
23.8
MONOCYTES_77
23.7
MONOCYTES_78
23.5
MONOCYTES_79
23.4
MONOCYTES_80
23.2
MONOCYTES_81
23.2
MONOCYTES_82
22.8
MONOCYTES_83
22.5
MONOCYTES_84
22.4
MONOCYTES_85
22.2
MONOCYTES_86
22.2
MONOCYTES_87
21.8
MONOCYTES_88
21.3
MONOCYTES_89
21.0
MONOCYTES_90
20.7
MONOCYTES_91
18.2
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Non-classical monocyte TPM: 35.9
Samples: 90
Max TPM: 53.8
Min TPM: 21.1
M2_1
53.8
M2_2
49.0
M2_3
46.3
M2_4
46.0
M2_5
45.8
M2_6
45.8
M2_7
45.3
M2_8
44.7
M2_9
44.2
M2_10
44.1
M2_11
44.1
M2_12
43.6
M2_13
43.5
M2_14
43.5
M2_15
42.6
M2_16
42.6
M2_17
42.1
M2_18
41.7
M2_19
40.2
M2_20
39.8
M2_21
39.7
M2_22
39.6
M2_23
38.9
M2_24
38.8
M2_25
38.5
M2_26
38.3
M2_27
38.3
M2_28
38.1
M2_29
37.9
M2_30
37.8
M2_31
37.6
M2_32
37.3
M2_33
37.2
M2_34
36.7
M2_35
36.6
M2_36
36.5
M2_37
36.4
M2_38
36.2
M2_39
36.1
M2_40
35.8
M2_41
35.7
M2_42
35.6
M2_43
35.4
M2_44
35.3
M2_45
35.2
M2_46
35.0
M2_47
35.0
M2_48
34.8
M2_49
34.8
M2_50
34.6
M2_51
34.6
M2_52
34.3
M2_53
34.2
M2_54
34.0
M2_55
34.0
M2_56
33.7
M2_57
33.7
M2_58
33.4
M2_59
33.3
M2_60
33.1
M2_61
32.5
M2_62
32.4
M2_63
32.3
M2_64
32.1
M2_65
31.9
M2_66
31.8
M2_67
31.8
M2_68
31.5
M2_69
31.2
M2_70
31.1
M2_71
31.1
M2_72
31.1
M2_73
30.9
M2_74
30.8
M2_75
30.7
M2_76
30.7
M2_77
30.6
M2_78
30.5
M2_79
30.5
M2_80
30.4
M2_81
30.4
M2_82
30.2
M2_83
29.7
M2_84
29.1
M2_85
28.6
M2_86
28.4
M2_87
27.9
M2_88
27.4
M2_89
26.1
M2_90
21.1
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