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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:862.1 nTPM
FANTOM5:376.4 Scaled Tags Per Million
Pig:1457.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043245Antibody CAB012340
Glial cells Not detectedNot detected
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

862.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 862.1
Samples: 300

Max nTPM: 2097.4
Min nTPM: 17.8
Std nTPM: 477.8
Median nTPM: 879.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2097.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2093.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2058.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1990.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1916.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1850.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1773.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1760.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1759.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1749.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1688.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1685.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1681.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1648.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1646.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1634.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1598.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1586.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1583.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1574.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1574.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1538.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1524.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1513.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1507.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1505.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1475.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1475.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1472.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1469.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1464.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1456.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1451.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1434.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1429.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1418.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1416.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1407.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1404.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1403.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1403.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1396.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1390.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1384.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1383.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1378.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1373.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1358.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1354.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1347.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1337.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1324.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1324.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1322.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1321.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1316.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1315.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1312.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1307.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1307.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1293.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1292.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1281.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1273.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1267.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1266.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1265.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1256.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1252.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1250.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1246.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1242.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1242.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1237.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1231.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1230.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1227.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1221.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1219.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1215.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1209.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1201.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1194.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1190.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1187.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1181.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1170.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1170.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1165.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1163.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1155.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1152.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1149.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1148.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1139.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1137.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1128.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1126.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1116.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1115.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1112.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1107.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1098.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1094.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1091.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1086.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1083.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1078.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1069.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1068.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1061.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1049.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1049.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1047.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1042.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1039.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1032.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1031.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1025.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1020.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1018.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1003.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1003.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1002.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 984.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 976.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 975.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 974.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 972.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 966.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 966.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 963.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 961.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 956.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 955.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 946.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 944.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 942.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 939.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 937.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 930.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 930.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 925.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 924.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 911.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 910.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 904.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 893.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 888.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 883.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 874.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 871.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 866.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 858.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 851.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 850.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 842.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 837.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 830.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 828.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 824.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 821.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 820.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 799.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 792.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 785.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 778.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 778.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 775.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 759.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 756.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 755.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 754.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 752.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 747.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 744.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 743.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 743.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 739.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 729.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 728.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 719.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 709.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 706.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 704.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 701.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 695.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 691.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 686.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 684.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 684.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 676.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 659.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 655.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 647.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 647.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 642.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 642.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 640.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 637.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 634.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 629.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 624.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 624.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 618.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 595.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 585.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 558.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 557.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 529.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 527.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 507.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 505.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 503.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 499.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 491.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 490.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 489.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 484.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 478.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 472.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 471.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 462.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 456.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 454.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 450.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 448.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 436.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 430.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 423.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 397.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 395.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 382.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 375.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 365.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 363.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 359.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 355.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 347.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 340.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 337.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 333.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 328.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 319.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 317.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 316.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 314.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 313.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 312.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 311.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 310.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 299.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 293.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 292.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 287.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 285.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 284.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 284.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 282.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 277.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 271.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 270.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 258.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 249.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 246.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 243.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 242.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 239.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 228.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 225.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 220.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 210.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 209.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 208.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 197.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 186.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 180.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 179.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 176.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 160.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 154.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 152.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 150.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 145.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 138.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 128.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 123.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 108.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 93.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 88.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 87.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 83.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 69.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 65.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 64.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 46.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 44.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 42.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 28.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 17.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

376.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 376.4
FF:10164-103B2 76 years, female 376.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1457.4
Pig sample Sample description nTPM
Caudate
nTPM: 1457.4
Samples: 4

Max nTPM: 2067.3
Min nTPM: 1019.4
Sample A Female 1019.4
Sample B Female 1394.0
Sample C Male 2067.3
Sample D Male 1348.9

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