A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9631.7
nTPM
Monaco:
2387.2
nTPM
Schmiedel:
183.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9631.7
HPA sample
nTPM
Memory B-cell nTPM: 9631.7
Samples: 6
Max nTPM: 11284.2
Min nTPM: 6400.9
P10809_1017
6400.9
P10809_1025
10486.3
P10809_1044
11284.2
P10809_1063
9972.2
P10809_1092
9488.8
P10809_1105
10158.1
Naive B-cell nTPM: 8783.4
Samples: 6
Max nTPM: 9926.0
Min nTPM: 5695.3
P10809_1011
5695.3
P10809_1029
8760.8
P10809_1048
9926.0
P10809_1067
9743.7
P10809_1091
8682.8
P10809_1104
9891.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2387.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2387.2
Samples: 4
Max nTPM: 5210.7
Min nTPM: 616.8
RHH5310_R3677
1875.7
RHH5218_R3590
616.8
RHH5247_R3619
5210.7
RHH5276_R3648
1845.6
Naive B-cell nTPM: 1972.9
Samples: 4
Max nTPM: 3213.4
Min nTPM: 1070.8
RHH5308_R3675
2096.2
RHH5216_R3588
1070.8
RHH5245_R3617
3213.4
RHH5274_R3646
1511.0
Non-switched memory B-cell nTPM: 1630.9
Samples: 4
Max nTPM: 2208.0
Min nTPM: 932.5
RHH5309_R3676
1965.3
RHH5217_R3589
932.5
RHH5246_R3618
1417.9
RHH5275_R3647
2208.0
Plasmablast nTPM: 1037.2
Samples: 4
Max nTPM: 1209.9
Min nTPM: 678.0
RHH5312_R3679
1209.9
RHH5220_R3592
678.0
RHH5249_R3621
1207.3
RHH5278_R3650
1053.7
Switched memory B-cell nTPM: 1456.5
Samples: 4
Max nTPM: 1970.7
Min nTPM: 913.4
RHH5311_R3678
1970.7
RHH5219_R3591
1214.5
RHH5248_R3620
913.4
RHH5277_R3649
1727.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
183.1
Schmiedel sample id
TPM
Naive B-cell TPM: 183.1
Samples: 91
Max TPM: 244.1
Min TPM: 106.5
B_CELL_NAIVE_1
244.1
B_CELL_NAIVE_2
230.3
B_CELL_NAIVE_3
228.5
B_CELL_NAIVE_4
222.2
B_CELL_NAIVE_5
220.1
B_CELL_NAIVE_6
216.9
B_CELL_NAIVE_7
216.4
B_CELL_NAIVE_8
216.3
B_CELL_NAIVE_9
215.9
B_CELL_NAIVE_10
212.0
B_CELL_NAIVE_11
211.9
B_CELL_NAIVE_12
211.5
B_CELL_NAIVE_13
211.2
B_CELL_NAIVE_14
210.9
B_CELL_NAIVE_15
210.2
B_CELL_NAIVE_16
210.2
B_CELL_NAIVE_17
209.3
B_CELL_NAIVE_18
204.4
B_CELL_NAIVE_19
204.1
B_CELL_NAIVE_20
202.5
B_CELL_NAIVE_21
200.9
B_CELL_NAIVE_22
200.7
B_CELL_NAIVE_23
200.3
B_CELL_NAIVE_24
200.3
B_CELL_NAIVE_25
198.9
B_CELL_NAIVE_26
198.5
B_CELL_NAIVE_27
196.3
B_CELL_NAIVE_28
196.2
B_CELL_NAIVE_29
196.0
B_CELL_NAIVE_30
194.5
B_CELL_NAIVE_31
193.2
B_CELL_NAIVE_32
191.9
B_CELL_NAIVE_33
191.7
B_CELL_NAIVE_34
191.6
B_CELL_NAIVE_35
189.0
B_CELL_NAIVE_36
188.4
B_CELL_NAIVE_37
187.9
B_CELL_NAIVE_38
187.8
B_CELL_NAIVE_39
186.9
B_CELL_NAIVE_40
186.5
B_CELL_NAIVE_41
184.9
B_CELL_NAIVE_42
184.9
B_CELL_NAIVE_43
184.4
B_CELL_NAIVE_44
184.0
B_CELL_NAIVE_45
182.6
B_CELL_NAIVE_46
181.6
B_CELL_NAIVE_47
180.8
B_CELL_NAIVE_48
180.0
B_CELL_NAIVE_49
179.6
B_CELL_NAIVE_50
179.3
B_CELL_NAIVE_51
179.2
B_CELL_NAIVE_52
178.9
B_CELL_NAIVE_53
178.7
B_CELL_NAIVE_54
177.9
B_CELL_NAIVE_55
177.8
B_CELL_NAIVE_56
177.6
B_CELL_NAIVE_57
176.8
B_CELL_NAIVE_58
176.8
B_CELL_NAIVE_59
176.7
B_CELL_NAIVE_60
175.6
B_CELL_NAIVE_61
174.4
B_CELL_NAIVE_62
174.3
B_CELL_NAIVE_63
172.5
B_CELL_NAIVE_64
171.7
B_CELL_NAIVE_65
170.0
B_CELL_NAIVE_66
169.0
B_CELL_NAIVE_67
168.7
B_CELL_NAIVE_68
168.3
B_CELL_NAIVE_69
168.2
B_CELL_NAIVE_70
166.2
B_CELL_NAIVE_71
165.4
B_CELL_NAIVE_72
164.2
B_CELL_NAIVE_73
163.9
B_CELL_NAIVE_74
163.1
B_CELL_NAIVE_75
162.1
B_CELL_NAIVE_76
161.0
B_CELL_NAIVE_77
160.5
B_CELL_NAIVE_78
160.1
B_CELL_NAIVE_79
159.6
B_CELL_NAIVE_80
159.6
B_CELL_NAIVE_81
157.8
B_CELL_NAIVE_82
157.2
B_CELL_NAIVE_83
152.6
B_CELL_NAIVE_84
151.4
B_CELL_NAIVE_85
149.0
B_CELL_NAIVE_86
145.2
B_CELL_NAIVE_87
144.4
B_CELL_NAIVE_88
143.1
B_CELL_NAIVE_89
131.6
B_CELL_NAIVE_90
116.8
B_CELL_NAIVE_91
106.5
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