A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5734.0
nTPM
Monaco:
701.7
nTPM
Schmiedel:
79.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5734.0
HPA sample
nTPM
NK-cell nTPM: 5734.0
Samples: 6
Max nTPM: 7615.2
Min nTPM: 2689.7
P10809_1013
4854.4
P10809_1033
7615.2
P10809_1052
5778.9
P10809_1071
7097.1
P10809_1093
2689.7
P10809_1103
6368.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
701.7
Monaco sample
nTPM
NK-cell nTPM: 701.8
Samples: 4
Max nTPM: 758.7
Min nTPM: 646.5
RHH5316_R3683
758.7
RHH5224_R3596
646.5
RHH5253_R3625
682.4
RHH5282_R3654
719.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.9
Schmiedel sample id
TPM
NK-cell TPM: 79.9
Samples: 90
Max TPM: 122.3
Min TPM: 50.5
NK_1
122.3
NK_2
116.4
NK_3
109.8
NK_4
107.1
NK_5
105.7
NK_6
104.4
NK_7
101.4
NK_8
100.8
NK_9
100.2
NK_10
99.2
NK_11
96.5
NK_12
96.1
NK_13
96.0
NK_14
95.8
NK_15
95.4
NK_16
94.9
NK_17
94.8
NK_18
94.8
NK_19
92.9
NK_20
92.3
NK_21
91.8
NK_22
90.8
NK_23
90.6
NK_24
90.3
NK_25
90.0
NK_26
89.7
NK_27
87.3
NK_28
87.0
NK_29
85.5
NK_30
85.2
NK_31
84.1
NK_32
84.1
NK_33
83.8
NK_34
83.7
NK_35
82.6
NK_36
81.5
NK_37
80.7
NK_38
80.5
NK_39
79.9
NK_40
79.7
NK_41
79.6
NK_42
79.3
NK_43
79.3
NK_44
78.8
NK_45
78.5
NK_46
78.5
NK_47
77.9
NK_48
77.3
NK_49
76.0
NK_50
75.5
NK_51
75.1
NK_52
74.9
NK_53
74.7
NK_54
74.6
NK_55
74.3
NK_56
74.2
NK_57
74.1
NK_58
74.0
NK_59
73.0
NK_60
72.9
NK_61
72.3
NK_62
72.3
NK_63
72.0
NK_64
72.0
NK_65
72.0
NK_66
71.8
NK_67
71.8
NK_68
70.2
NK_69
69.1
NK_70
68.9
NK_71
67.2
NK_72
67.0
NK_73
67.0
NK_74
66.9
NK_75
66.7
NK_76
66.4
NK_77
66.2
NK_78
65.7
NK_79
65.3
NK_80
64.4
NK_81
63.4
NK_82
62.6
NK_83
61.3
NK_84
58.1
NK_85
56.9
NK_86
56.6
NK_87
55.6
NK_88
53.0
NK_89
52.7
NK_90
50.5
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