A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3321.3
nTPM
Monaco:
948.8
nTPM
Schmiedel:
85.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3321.3
HPA sample
nTPM
Classical monocyte nTPM: 3206.0
Samples: 6
Max nTPM: 5015.4
Min nTPM: 2263.6
P10809_1003
5015.4
P10809_1020
2628.8
P10809_1039
2712.4
P10809_1058
3069.7
P10809_1080
2263.6
P10809_1107
3546.4
Intermediate monocyte nTPM: 3161.3
Samples: 6
Max nTPM: 4730.2
Min nTPM: 2160.3
P10809_1004
2160.3
P10809_1023
4036.1
P10809_1042
3031.0
P10809_1061
2181.9
P10809_1081
2828.0
P10809_1108
4730.2
Non-classical monocyte nTPM: 3321.3
Samples: 5
Max nTPM: 4398.3
Min nTPM: 2827.9
P10809_1005
2949.1
P10809_1053
2878.3
P10809_1072
2827.9
P10809_1082
3552.7
P10809_1109
4398.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
948.8
Monaco sample
nTPM
Classical monocyte nTPM: 628.7
Samples: 4
Max nTPM: 768.8
Min nTPM: 493.1
RHH5313_R3680
768.8
RHH5221_R3593
581.7
RHH5250_R3622
493.1
RHH5279_R3651
671.0
Intermediate monocyte nTPM: 948.8
Samples: 4
Max nTPM: 1120.4
Min nTPM: 692.2
RHH5314_R3681
983.0
RHH5222_R3594
999.7
RHH5251_R3623
1120.4
RHH5280_R3652
692.2
Non-classical monocyte nTPM: 821.2
Samples: 4
Max nTPM: 1067.5
Min nTPM: 629.3
RHH5315_R3682
1067.5
RHH5223_R3595
776.8
RHH5252_R3624
811.3
RHH5281_R3653
629.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.7
Schmiedel sample id
TPM
Classical monocyte TPM: 54.6
Samples: 91
Max TPM: 78.4
Min TPM: 34.5
MONOCYTES_1
78.4
MONOCYTES_2
71.1
MONOCYTES_3
71.1
MONOCYTES_4
68.8
MONOCYTES_5
67.3
MONOCYTES_6
65.3
MONOCYTES_7
65.2
MONOCYTES_8
64.8
MONOCYTES_9
64.5
MONOCYTES_10
64.2
MONOCYTES_11
64.1
MONOCYTES_12
63.9
MONOCYTES_13
63.6
MONOCYTES_14
63.5
MONOCYTES_15
62.0
MONOCYTES_16
61.9
MONOCYTES_17
61.9
MONOCYTES_18
61.6
MONOCYTES_19
60.8
MONOCYTES_20
60.4
MONOCYTES_21
60.4
MONOCYTES_22
59.5
MONOCYTES_23
59.4
MONOCYTES_24
58.7
MONOCYTES_25
58.5
MONOCYTES_26
58.1
MONOCYTES_27
58.1
MONOCYTES_28
58.0
MONOCYTES_29
57.8
MONOCYTES_30
57.6
MONOCYTES_31
57.5
MONOCYTES_32
57.3
MONOCYTES_33
57.2
MONOCYTES_34
56.6
MONOCYTES_35
56.3
MONOCYTES_36
56.1
MONOCYTES_37
56.0
MONOCYTES_38
56.0
MONOCYTES_39
55.7
MONOCYTES_40
55.5
MONOCYTES_41
55.2
MONOCYTES_42
55.1
MONOCYTES_43
55.1
MONOCYTES_44
54.7
MONOCYTES_45
54.2
MONOCYTES_46
54.2
MONOCYTES_47
53.9
MONOCYTES_48
53.7
MONOCYTES_49
53.7
MONOCYTES_50
53.5
MONOCYTES_51
53.2
MONOCYTES_52
53.0
MONOCYTES_53
52.9
MONOCYTES_54
52.5
MONOCYTES_55
52.3
MONOCYTES_56
51.7
MONOCYTES_57
51.4
MONOCYTES_58
51.3
MONOCYTES_59
51.0
MONOCYTES_60
50.9
MONOCYTES_61
50.9
MONOCYTES_62
50.8
MONOCYTES_63
50.7
MONOCYTES_64
50.2
MONOCYTES_65
50.0
MONOCYTES_66
50.0
MONOCYTES_67
50.0
MONOCYTES_68
49.9
MONOCYTES_69
49.6
MONOCYTES_70
49.5
MONOCYTES_71
49.3
MONOCYTES_72
49.2
MONOCYTES_73
48.4
MONOCYTES_74
48.3
MONOCYTES_75
48.1
MONOCYTES_76
47.7
MONOCYTES_77
47.0
MONOCYTES_78
47.0
MONOCYTES_79
47.0
MONOCYTES_80
46.6
MONOCYTES_81
45.9
MONOCYTES_82
44.9
MONOCYTES_83
44.9
MONOCYTES_84
44.9
MONOCYTES_85
44.6
MONOCYTES_86
44.5
MONOCYTES_87
44.1
MONOCYTES_88
43.2
MONOCYTES_89
41.3
MONOCYTES_90
41.0
MONOCYTES_91
34.5
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Non-classical monocyte TPM: 85.7
Samples: 90
Max TPM: 129.3
Min TPM: 50.2
M2_1
129.3
M2_2
115.8
M2_3
115.2
M2_4
113.7
M2_5
112.8
M2_6
111.0
M2_7
108.7
M2_8
108.0
M2_9
101.8
M2_10
101.2
M2_11
99.6
M2_12
99.0
M2_13
98.5
M2_14
98.3
M2_15
96.9
M2_16
96.7
M2_17
95.5
M2_18
94.0
M2_19
93.2
M2_20
93.0
M2_21
92.5
M2_22
91.2
M2_23
90.6
M2_24
90.6
M2_25
90.6
M2_26
90.4
M2_27
90.3
M2_28
90.3
M2_29
90.2
M2_30
90.1
M2_31
90.0
M2_32
89.1
M2_33
89.1
M2_34
88.9
M2_35
88.4
M2_36
88.3
M2_37
87.5
M2_38
87.2
M2_39
87.1
M2_40
86.7
M2_41
86.2
M2_42
85.9
M2_43
85.7
M2_44
85.2
M2_45
84.6
M2_46
83.2
M2_47
82.4
M2_48
82.2
M2_49
82.0
M2_50
81.8
M2_51
81.5
M2_52
81.3
M2_53
81.2
M2_54
81.2
M2_55
81.1
M2_56
81.1
M2_57
80.6
M2_58
80.5
M2_59
80.0
M2_60
79.9
M2_61
79.8
M2_62
79.7
M2_63
79.0
M2_64
78.9
M2_65
78.8
M2_66
78.6
M2_67
78.6
M2_68
78.4
M2_69
76.8
M2_70
76.1
M2_71
75.9
M2_72
75.8
M2_73
75.6
M2_74
74.4
M2_75
74.3
M2_76
74.1
M2_77
73.8
M2_78
73.7
M2_79
72.8
M2_80
71.6
M2_81
71.4
M2_82
70.3
M2_83
70.1
M2_84
70.0
M2_85
69.2
M2_86
68.3
M2_87
67.1
M2_88
66.4
M2_89
65.7
M2_90
50.2
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