A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
57.6
nTPM
Schmiedel:
153.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
Memory B-cell nTPM: 2.0
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.9
P10809_1017
1.6
P10809_1025
0.9
P10809_1044
2.8
P10809_1063
1.4
P10809_1092
1.7
P10809_1105
3.3
Naive B-cell nTPM: 1.7
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.0
P10809_1011
3.3
P10809_1029
2.5
P10809_1048
0.0
P10809_1067
1.9
P10809_1091
0.7
P10809_1104
1.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 52.6
Samples: 4
Max nTPM: 64.6
Min nTPM: 33.3
RHH5310_R3677
33.3
RHH5218_R3590
57.5
RHH5247_R3619
64.6
RHH5276_R3648
54.9
Naive B-cell nTPM: 57.6
Samples: 4
Max nTPM: 96.9
Min nTPM: 34.3
RHH5308_R3675
47.4
RHH5216_R3588
34.3
RHH5245_R3617
96.9
RHH5274_R3646
51.7
Non-switched memory B-cell nTPM: 42.8
Samples: 4
Max nTPM: 52.6
Min nTPM: 30.1
RHH5309_R3676
30.1
RHH5217_R3589
46.7
RHH5246_R3618
41.7
RHH5275_R3647
52.6
Plasmablast nTPM: 52.6
Samples: 4
Max nTPM: 63.1
Min nTPM: 39.2
RHH5312_R3679
63.1
RHH5220_R3592
51.0
RHH5249_R3621
39.2
RHH5278_R3650
56.9
Switched memory B-cell nTPM: 51.5
Samples: 4
Max nTPM: 67.1
Min nTPM: 41.3
RHH5311_R3678
41.3
RHH5219_R3591
51.3
RHH5248_R3620
67.1
RHH5277_R3649
46.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
153.4
Schmiedel sample id
TPM
Naive B-cell TPM: 153.4
Samples: 91
Max TPM: 237.6
Min TPM: 114.6
B_CELL_NAIVE_1
237.6
B_CELL_NAIVE_2
221.2
B_CELL_NAIVE_3
213.4
B_CELL_NAIVE_4
207.4
B_CELL_NAIVE_5
199.1
B_CELL_NAIVE_6
198.7
B_CELL_NAIVE_7
190.4
B_CELL_NAIVE_8
186.8
B_CELL_NAIVE_9
180.3
B_CELL_NAIVE_10
180.3
B_CELL_NAIVE_11
179.2
B_CELL_NAIVE_12
178.4
B_CELL_NAIVE_13
176.8
B_CELL_NAIVE_14
174.4
B_CELL_NAIVE_15
173.7
B_CELL_NAIVE_16
172.1
B_CELL_NAIVE_17
171.8
B_CELL_NAIVE_18
170.3
B_CELL_NAIVE_19
169.9
B_CELL_NAIVE_20
166.8
B_CELL_NAIVE_21
165.2
B_CELL_NAIVE_22
164.9
B_CELL_NAIVE_23
164.8
B_CELL_NAIVE_24
163.6
B_CELL_NAIVE_25
163.0
B_CELL_NAIVE_26
162.3
B_CELL_NAIVE_27
161.8
B_CELL_NAIVE_28
160.3
B_CELL_NAIVE_29
158.9
B_CELL_NAIVE_30
158.9
B_CELL_NAIVE_31
157.9
B_CELL_NAIVE_32
157.4
B_CELL_NAIVE_33
157.3
B_CELL_NAIVE_34
156.1
B_CELL_NAIVE_35
155.9
B_CELL_NAIVE_36
155.4
B_CELL_NAIVE_37
155.2
B_CELL_NAIVE_38
155.1
B_CELL_NAIVE_39
154.6
B_CELL_NAIVE_40
154.5
B_CELL_NAIVE_41
153.5
B_CELL_NAIVE_42
153.2
B_CELL_NAIVE_43
152.8
B_CELL_NAIVE_44
151.6
B_CELL_NAIVE_45
151.5
B_CELL_NAIVE_46
151.2
B_CELL_NAIVE_47
150.5
B_CELL_NAIVE_48
149.1
B_CELL_NAIVE_49
148.3
B_CELL_NAIVE_50
148.2
B_CELL_NAIVE_51
148.2
B_CELL_NAIVE_52
146.9
B_CELL_NAIVE_53
146.1
B_CELL_NAIVE_54
146.0
B_CELL_NAIVE_55
146.0
B_CELL_NAIVE_56
145.6
B_CELL_NAIVE_57
144.4
B_CELL_NAIVE_58
143.4
B_CELL_NAIVE_59
141.7
B_CELL_NAIVE_60
141.5
B_CELL_NAIVE_61
140.7
B_CELL_NAIVE_62
140.4
B_CELL_NAIVE_63
140.0
B_CELL_NAIVE_64
139.7
B_CELL_NAIVE_65
139.7
B_CELL_NAIVE_66
139.4
B_CELL_NAIVE_67
139.3
B_CELL_NAIVE_68
138.8
B_CELL_NAIVE_69
138.7
B_CELL_NAIVE_70
137.9
B_CELL_NAIVE_71
137.4
B_CELL_NAIVE_72
135.5
B_CELL_NAIVE_73
134.7
B_CELL_NAIVE_74
133.2
B_CELL_NAIVE_75
132.9
B_CELL_NAIVE_76
131.8
B_CELL_NAIVE_77
131.4
B_CELL_NAIVE_78
130.8
B_CELL_NAIVE_79
130.6
B_CELL_NAIVE_80
130.5
B_CELL_NAIVE_81
129.9
B_CELL_NAIVE_82
129.0
B_CELL_NAIVE_83
126.8
B_CELL_NAIVE_84
125.3
B_CELL_NAIVE_85
123.0
B_CELL_NAIVE_86
122.1
B_CELL_NAIVE_87
122.1
B_CELL_NAIVE_88
119.2
B_CELL_NAIVE_89
117.2
B_CELL_NAIVE_90
116.1
B_CELL_NAIVE_91
114.6
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