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BETA
  • SUMMARY

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  • BRAIN

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  • RBBP6
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:2.0 nTPM
Monaco:57.6 nTPM
Schmiedel:153.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2.0
HPA sample nTPM
Memory B-cell
nTPM: 2.0
Samples: 6

Max nTPM: 3.3
Min nTPM: 0.9
P10809_1017 1.6
P10809_1025 0.9
P10809_1044 2.8
P10809_1063 1.4
P10809_1092 1.7
P10809_1105 3.3
Naive B-cell
nTPM: 1.7
Samples: 6

Max nTPM: 3.3
Min nTPM: 0.0
P10809_1011 3.3
P10809_1029 2.5
P10809_1048 0.0
P10809_1067 1.9
P10809_1091 0.7
P10809_1104 1.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

57.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 52.6
Samples: 4

Max nTPM: 64.6
Min nTPM: 33.3
RHH5310_R3677 33.3
RHH5218_R3590 57.5
RHH5247_R3619 64.6
RHH5276_R3648 54.9
Naive B-cell
nTPM: 57.6
Samples: 4

Max nTPM: 96.9
Min nTPM: 34.3
RHH5308_R3675 47.4
RHH5216_R3588 34.3
RHH5245_R3617 96.9
RHH5274_R3646 51.7
Non-switched memory B-cell
nTPM: 42.8
Samples: 4

Max nTPM: 52.6
Min nTPM: 30.1
RHH5309_R3676 30.1
RHH5217_R3589 46.7
RHH5246_R3618 41.7
RHH5275_R3647 52.6
Plasmablast
nTPM: 52.6
Samples: 4

Max nTPM: 63.1
Min nTPM: 39.2
RHH5312_R3679 63.1
RHH5220_R3592 51.0
RHH5249_R3621 39.2
RHH5278_R3650 56.9
Switched memory B-cell
nTPM: 51.5
Samples: 4

Max nTPM: 67.1
Min nTPM: 41.3
RHH5311_R3678 41.3
RHH5219_R3591 51.3
RHH5248_R3620 67.1
RHH5277_R3649 46.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

153.4
Schmiedel sample id TPM
Naive B-cell
TPM: 153.4
Samples: 91

Max TPM: 237.6
Min TPM: 114.6
B_CELL_NAIVE_1 237.6
B_CELL_NAIVE_2 221.2
B_CELL_NAIVE_3 213.4
B_CELL_NAIVE_4 207.4
B_CELL_NAIVE_5 199.1
B_CELL_NAIVE_6 198.7
B_CELL_NAIVE_7 190.4
B_CELL_NAIVE_8 186.8
B_CELL_NAIVE_9 180.3
B_CELL_NAIVE_10 180.3
B_CELL_NAIVE_11 179.2
B_CELL_NAIVE_12 178.4
B_CELL_NAIVE_13 176.8
B_CELL_NAIVE_14 174.4
B_CELL_NAIVE_15 173.7
B_CELL_NAIVE_16 172.1
B_CELL_NAIVE_17 171.8
B_CELL_NAIVE_18 170.3
B_CELL_NAIVE_19 169.9
B_CELL_NAIVE_20 166.8
B_CELL_NAIVE_21 165.2
B_CELL_NAIVE_22 164.9
B_CELL_NAIVE_23 164.8
B_CELL_NAIVE_24 163.6
B_CELL_NAIVE_25 163.0
B_CELL_NAIVE_26 162.3
B_CELL_NAIVE_27 161.8
B_CELL_NAIVE_28 160.3
B_CELL_NAIVE_29 158.9
B_CELL_NAIVE_30 158.9
B_CELL_NAIVE_31 157.9
B_CELL_NAIVE_32 157.4
B_CELL_NAIVE_33 157.3
B_CELL_NAIVE_34 156.1
B_CELL_NAIVE_35 155.9
B_CELL_NAIVE_36 155.4
B_CELL_NAIVE_37 155.2
B_CELL_NAIVE_38 155.1
B_CELL_NAIVE_39 154.6
B_CELL_NAIVE_40 154.5
B_CELL_NAIVE_41 153.5
B_CELL_NAIVE_42 153.2
B_CELL_NAIVE_43 152.8
B_CELL_NAIVE_44 151.6
B_CELL_NAIVE_45 151.5
B_CELL_NAIVE_46 151.2
B_CELL_NAIVE_47 150.5
B_CELL_NAIVE_48 149.1
B_CELL_NAIVE_49 148.3
B_CELL_NAIVE_50 148.2
B_CELL_NAIVE_51 148.2
B_CELL_NAIVE_52 146.9
B_CELL_NAIVE_53 146.1
B_CELL_NAIVE_54 146.0
B_CELL_NAIVE_55 146.0
B_CELL_NAIVE_56 145.6
B_CELL_NAIVE_57 144.4
B_CELL_NAIVE_58 143.4
B_CELL_NAIVE_59 141.7
B_CELL_NAIVE_60 141.5
B_CELL_NAIVE_61 140.7
B_CELL_NAIVE_62 140.4
B_CELL_NAIVE_63 140.0
B_CELL_NAIVE_64 139.7
B_CELL_NAIVE_65 139.7
B_CELL_NAIVE_66 139.4
B_CELL_NAIVE_67 139.3
B_CELL_NAIVE_68 138.8
B_CELL_NAIVE_69 138.7
B_CELL_NAIVE_70 137.9
B_CELL_NAIVE_71 137.4
B_CELL_NAIVE_72 135.5
B_CELL_NAIVE_73 134.7
B_CELL_NAIVE_74 133.2
B_CELL_NAIVE_75 132.9
B_CELL_NAIVE_76 131.8
B_CELL_NAIVE_77 131.4
B_CELL_NAIVE_78 130.8
B_CELL_NAIVE_79 130.6
B_CELL_NAIVE_80 130.5
B_CELL_NAIVE_81 129.9
B_CELL_NAIVE_82 129.0
B_CELL_NAIVE_83 126.8
B_CELL_NAIVE_84 125.3
B_CELL_NAIVE_85 123.0
B_CELL_NAIVE_86 122.1
B_CELL_NAIVE_87 122.1
B_CELL_NAIVE_88 119.2
B_CELL_NAIVE_89 117.2
B_CELL_NAIVE_90 116.1
B_CELL_NAIVE_91 114.6
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