A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
53.9
nTPM
Schmiedel:
96.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
NK-cell nTPM: 3.5
Samples: 6
Max nTPM: 11.6
Min nTPM: 1.1
P10809_1013
2.4
P10809_1033
1.1
P10809_1052
1.6
P10809_1071
1.9
P10809_1093
11.6
P10809_1103
2.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.9
Monaco sample
nTPM
NK-cell nTPM: 53.9
Samples: 4
Max nTPM: 81.0
Min nTPM: 34.0
RHH5316_R3683
34.0
RHH5224_R3596
57.6
RHH5253_R3625
81.0
RHH5282_R3654
43.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.9
Schmiedel sample id
TPM
NK-cell TPM: 96.9
Samples: 90
Max TPM: 155.5
Min TPM: 59.0
NK_1
155.5
NK_2
153.8
NK_3
141.6
NK_4
134.3
NK_5
134.1
NK_6
129.9
NK_7
129.7
NK_8
129.0
NK_9
124.4
NK_10
123.1
NK_11
119.9
NK_12
118.7
NK_13
118.5
NK_14
115.5
NK_15
114.0
NK_16
113.8
NK_17
112.6
NK_18
112.5
NK_19
112.2
NK_20
111.3
NK_21
110.1
NK_22
110.0
NK_23
109.9
NK_24
109.0
NK_25
108.2
NK_26
108.1
NK_27
107.9
NK_28
107.0
NK_29
106.8
NK_30
106.5
NK_31
105.5
NK_32
105.3
NK_33
104.7
NK_34
102.8
NK_35
102.6
NK_36
101.9
NK_37
101.3
NK_38
100.3
NK_39
100.0
NK_40
98.9
NK_41
96.9
NK_42
96.6
NK_43
96.2
NK_44
95.5
NK_45
95.3
NK_46
95.3
NK_47
94.8
NK_48
93.8
NK_49
93.4
NK_50
93.2
NK_51
93.1
NK_52
92.5
NK_53
92.2
NK_54
92.1
NK_55
91.6
NK_56
91.6
NK_57
91.4
NK_58
91.2
NK_59
90.3
NK_60
88.3
NK_61
87.3
NK_62
86.8
NK_63
85.9
NK_64
85.3
NK_65
84.8
NK_66
83.3
NK_67
82.9
NK_68
82.2
NK_69
82.0
NK_70
81.2
NK_71
79.1
NK_72
78.0
NK_73
76.6
NK_74
76.3
NK_75
75.7
NK_76
74.9
NK_77
74.6
NK_78
72.6
NK_79
70.9
NK_80
70.0
NK_81
69.2
NK_82
69.1
NK_83
68.8
NK_84
68.7
NK_85
68.1
NK_86
67.6
NK_87
65.1
NK_88
62.8
NK_89
59.8
NK_90
59.0
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