A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
43.7
nTPM
Schmiedel:
55.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.9
P10809_1003
1.0
P10809_1020
1.2
P10809_1039
0.9
P10809_1058
1.5
P10809_1080
1.1
P10809_1107
1.4
Intermediate monocyte nTPM: 2.0
Samples: 6
Max nTPM: 4.9
Min nTPM: 0.6
P10809_1004
1.3
P10809_1023
1.2
P10809_1042
2.9
P10809_1061
4.9
P10809_1081
1.0
P10809_1108
0.6
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 1.7
Min nTPM: 0.0
P10809_1005
1.7
P10809_1053
1.4
P10809_1072
0.0
P10809_1082
1.6
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.7
Monaco sample
nTPM
Classical monocyte nTPM: 42.7
Samples: 4
Max nTPM: 47.5
Min nTPM: 36.7
RHH5313_R3680
43.8
RHH5221_R3593
42.8
RHH5250_R3622
47.5
RHH5279_R3651
36.7
Intermediate monocyte nTPM: 43.7
Samples: 4
Max nTPM: 47.8
Min nTPM: 38.8
RHH5314_R3681
38.8
RHH5222_R3594
47.8
RHH5251_R3623
47.5
RHH5280_R3652
40.8
Non-classical monocyte nTPM: 39.9
Samples: 4
Max nTPM: 48.6
Min nTPM: 33.7
RHH5315_R3682
33.7
RHH5223_R3595
48.6
RHH5252_R3624
40.6
RHH5281_R3653
36.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.1
Schmiedel sample id
TPM
Classical monocyte TPM: 55.1
Samples: 91
Max TPM: 72.3
Min TPM: 41.0
MONOCYTES_1
72.3
MONOCYTES_2
71.1
MONOCYTES_3
67.0
MONOCYTES_4
64.9
MONOCYTES_5
64.9
MONOCYTES_6
64.7
MONOCYTES_7
63.9
MONOCYTES_8
63.6
MONOCYTES_9
63.4
MONOCYTES_10
63.3
MONOCYTES_11
62.2
MONOCYTES_12
62.1
MONOCYTES_13
61.5
MONOCYTES_14
61.4
MONOCYTES_15
60.9
MONOCYTES_16
60.6
MONOCYTES_17
60.0
MONOCYTES_18
59.5
MONOCYTES_19
59.2
MONOCYTES_20
58.7
MONOCYTES_21
58.6
MONOCYTES_22
58.6
MONOCYTES_23
58.5
MONOCYTES_24
58.3
MONOCYTES_25
58.3
MONOCYTES_26
58.2
MONOCYTES_27
58.0
MONOCYTES_28
58.0
MONOCYTES_29
57.7
MONOCYTES_30
57.4
MONOCYTES_31
57.2
MONOCYTES_32
57.2
MONOCYTES_33
57.2
MONOCYTES_34
57.1
MONOCYTES_35
56.7
MONOCYTES_36
56.2
MONOCYTES_37
56.2
MONOCYTES_38
56.1
MONOCYTES_39
55.7
MONOCYTES_40
55.4
MONOCYTES_41
55.3
MONOCYTES_42
55.3
MONOCYTES_43
54.9
MONOCYTES_44
54.8
MONOCYTES_45
54.8
MONOCYTES_46
54.4
MONOCYTES_47
54.4
MONOCYTES_48
54.4
MONOCYTES_49
54.3
MONOCYTES_50
54.3
MONOCYTES_51
54.2
MONOCYTES_52
53.9
MONOCYTES_53
53.5
MONOCYTES_54
53.0
MONOCYTES_55
52.9
MONOCYTES_56
52.9
MONOCYTES_57
52.7
MONOCYTES_58
52.7
MONOCYTES_59
52.7
MONOCYTES_60
52.5
MONOCYTES_61
52.4
MONOCYTES_62
52.0
MONOCYTES_63
51.9
MONOCYTES_64
51.9
MONOCYTES_65
51.7
MONOCYTES_66
51.3
MONOCYTES_67
51.1
MONOCYTES_68
51.1
MONOCYTES_69
50.8
MONOCYTES_70
50.8
MONOCYTES_71
50.6
MONOCYTES_72
50.5
MONOCYTES_73
50.0
MONOCYTES_74
49.9
MONOCYTES_75
49.8
MONOCYTES_76
49.7
MONOCYTES_77
49.6
MONOCYTES_78
49.6
MONOCYTES_79
49.4
MONOCYTES_80
48.3
MONOCYTES_81
48.3
MONOCYTES_82
48.2
MONOCYTES_83
48.1
MONOCYTES_84
47.5
MONOCYTES_85
47.3
MONOCYTES_86
46.5
MONOCYTES_87
45.7
MONOCYTES_88
45.3
MONOCYTES_89
45.2
MONOCYTES_90
45.1
MONOCYTES_91
41.0
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Non-classical monocyte TPM: 51.2
Samples: 90
Max TPM: 71.7
Min TPM: 36.8
M2_1
71.7
M2_2
69.5
M2_3
68.9
M2_4
68.0
M2_5
67.1
M2_6
64.8
M2_7
64.8
M2_8
64.6
M2_9
64.6
M2_10
64.0
M2_11
63.0
M2_12
62.4
M2_13
61.8
M2_14
60.8
M2_15
60.0
M2_16
58.4
M2_17
58.3
M2_18
57.8
M2_19
57.2
M2_20
57.2
M2_21
57.0
M2_22
56.5
M2_23
56.5
M2_24
56.3
M2_25
55.8
M2_26
54.8
M2_27
54.7
M2_28
53.6
M2_29
53.3
M2_30
53.0
M2_31
52.8
M2_32
52.2
M2_33
52.1
M2_34
52.0
M2_35
52.0
M2_36
51.8
M2_37
51.7
M2_38
51.7
M2_39
51.7
M2_40
51.4
M2_41
51.2
M2_42
51.1
M2_43
50.8
M2_44
50.3
M2_45
50.2
M2_46
50.1
M2_47
49.9
M2_48
49.9
M2_49
49.9
M2_50
49.7
M2_51
49.4
M2_52
49.3
M2_53
49.3
M2_54
49.1
M2_55
49.1
M2_56
48.4
M2_57
47.8
M2_58
47.3
M2_59
47.1
M2_60
47.0
M2_61
46.9
M2_62
46.3
M2_63
46.1
M2_64
46.0
M2_65
45.7
M2_66
45.3
M2_67
45.0
M2_68
44.9
M2_69
44.7
M2_70
44.6
M2_71
44.3
M2_72
44.1
M2_73
43.8
M2_74
43.7
M2_75
43.7
M2_76
43.1
M2_77
42.9
M2_78
42.9
M2_79
42.9
M2_80
42.6
M2_81
42.0
M2_82
41.6
M2_83
40.3
M2_84
39.6
M2_85
39.4
M2_86
38.8
M2_87
38.2
M2_88
38.0
M2_89
37.8
M2_90
36.8
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