A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1324.6
nTPM
Monaco:
2582.4
nTPM
Schmiedel:
1264.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1324.6
HPA sample
nTPM
Memory B-cell nTPM: 1324.6
Samples: 6
Max nTPM: 1544.0
Min nTPM: 708.2
P10809_1017
1544.0
P10809_1025
1496.4
P10809_1044
708.2
P10809_1063
1328.8
P10809_1092
1371.4
P10809_1105
1499.0
Naive B-cell nTPM: 1109.7
Samples: 6
Max nTPM: 1305.0
Min nTPM: 1016.0
P10809_1011
1081.1
P10809_1029
1016.0
P10809_1048
1056.7
P10809_1067
1122.4
P10809_1091
1076.7
P10809_1104
1305.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2582.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1953.0
Samples: 4
Max nTPM: 3024.8
Min nTPM: 1311.4
RHH5310_R3677
3024.8
RHH5218_R3590
1419.1
RHH5247_R3619
2056.8
RHH5276_R3648
1311.4
Naive B-cell nTPM: 2289.4
Samples: 4
Max nTPM: 3358.4
Min nTPM: 1770.3
RHH5308_R3675
3358.4
RHH5216_R3588
2187.3
RHH5245_R3617
1841.6
RHH5274_R3646
1770.3
Non-switched memory B-cell nTPM: 2287.5
Samples: 4
Max nTPM: 3370.1
Min nTPM: 1518.5
RHH5309_R3676
3370.1
RHH5217_R3589
2071.4
RHH5246_R3618
2190.1
RHH5275_R3647
1518.5
Plasmablast nTPM: 2170.3
Samples: 4
Max nTPM: 2517.1
Min nTPM: 1757.4
RHH5312_R3679
2439.9
RHH5220_R3592
1966.7
RHH5249_R3621
2517.1
RHH5278_R3650
1757.4
Switched memory B-cell nTPM: 2582.4
Samples: 4
Max nTPM: 4261.1
Min nTPM: 1482.8
RHH5311_R3678
4261.1
RHH5219_R3591
2624.0
RHH5248_R3620
1961.7
RHH5277_R3649
1482.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1264.4
Schmiedel sample id
TPM
Naive B-cell TPM: 1264.4
Samples: 91
Max TPM: 1589.2
Min TPM: 811.7
B_CELL_NAIVE_1
1589.2
B_CELL_NAIVE_2
1470.0
B_CELL_NAIVE_3
1450.0
B_CELL_NAIVE_4
1418.5
B_CELL_NAIVE_5
1405.9
B_CELL_NAIVE_6
1404.6
B_CELL_NAIVE_7
1402.7
B_CELL_NAIVE_8
1401.7
B_CELL_NAIVE_9
1401.1
B_CELL_NAIVE_10
1398.2
B_CELL_NAIVE_11
1397.8
B_CELL_NAIVE_12
1397.5
B_CELL_NAIVE_13
1397.0
B_CELL_NAIVE_14
1390.7
B_CELL_NAIVE_15
1383.8
B_CELL_NAIVE_16
1381.8
B_CELL_NAIVE_17
1381.1
B_CELL_NAIVE_18
1363.6
B_CELL_NAIVE_19
1361.1
B_CELL_NAIVE_20
1356.4
B_CELL_NAIVE_21
1356.0
B_CELL_NAIVE_22
1356.0
B_CELL_NAIVE_23
1346.6
B_CELL_NAIVE_24
1345.8
B_CELL_NAIVE_25
1345.2
B_CELL_NAIVE_26
1343.9
B_CELL_NAIVE_27
1337.9
B_CELL_NAIVE_28
1336.0
B_CELL_NAIVE_29
1331.3
B_CELL_NAIVE_30
1325.1
B_CELL_NAIVE_31
1320.8
B_CELL_NAIVE_32
1319.0
B_CELL_NAIVE_33
1318.8
B_CELL_NAIVE_34
1315.8
B_CELL_NAIVE_35
1313.0
B_CELL_NAIVE_36
1309.2
B_CELL_NAIVE_37
1306.6
B_CELL_NAIVE_38
1304.9
B_CELL_NAIVE_39
1304.3
B_CELL_NAIVE_40
1302.1
B_CELL_NAIVE_41
1301.7
B_CELL_NAIVE_42
1295.2
B_CELL_NAIVE_43
1285.8
B_CELL_NAIVE_44
1277.2
B_CELL_NAIVE_45
1276.5
B_CELL_NAIVE_46
1272.6
B_CELL_NAIVE_47
1264.9
B_CELL_NAIVE_48
1264.5
B_CELL_NAIVE_49
1264.1
B_CELL_NAIVE_50
1251.7
B_CELL_NAIVE_51
1248.9
B_CELL_NAIVE_52
1238.3
B_CELL_NAIVE_53
1238.2
B_CELL_NAIVE_54
1237.6
B_CELL_NAIVE_55
1228.7
B_CELL_NAIVE_56
1222.9
B_CELL_NAIVE_57
1222.9
B_CELL_NAIVE_58
1221.5
B_CELL_NAIVE_59
1214.8
B_CELL_NAIVE_60
1213.1
B_CELL_NAIVE_61
1212.9
B_CELL_NAIVE_62
1207.7
B_CELL_NAIVE_63
1206.2
B_CELL_NAIVE_64
1203.9
B_CELL_NAIVE_65
1202.4
B_CELL_NAIVE_66
1197.5
B_CELL_NAIVE_67
1195.5
B_CELL_NAIVE_68
1192.9
B_CELL_NAIVE_69
1190.6
B_CELL_NAIVE_70
1178.2
B_CELL_NAIVE_71
1177.3
B_CELL_NAIVE_72
1176.2
B_CELL_NAIVE_73
1166.9
B_CELL_NAIVE_74
1165.0
B_CELL_NAIVE_75
1159.2
B_CELL_NAIVE_76
1159.0
B_CELL_NAIVE_77
1155.8
B_CELL_NAIVE_78
1146.3
B_CELL_NAIVE_79
1143.9
B_CELL_NAIVE_80
1139.4
B_CELL_NAIVE_81
1123.5
B_CELL_NAIVE_82
1120.7
B_CELL_NAIVE_83
1119.9
B_CELL_NAIVE_84
1116.8
B_CELL_NAIVE_85
1116.3
B_CELL_NAIVE_86
1110.4
B_CELL_NAIVE_87
1110.3
B_CELL_NAIVE_88
1096.4
B_CELL_NAIVE_89
1019.6
B_CELL_NAIVE_90
1009.8
B_CELL_NAIVE_91
811.7
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