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BETA
  • SUMMARY

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  • BRAIN

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  • RPL5
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:1324.6 nTPM
Monaco:2582.4 nTPM
Schmiedel:1264.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1324.6
HPA sample nTPM
Memory B-cell
nTPM: 1324.6
Samples: 6

Max nTPM: 1544.0
Min nTPM: 708.2
P10809_1017 1544.0
P10809_1025 1496.4
P10809_1044 708.2
P10809_1063 1328.8
P10809_1092 1371.4
P10809_1105 1499.0
Naive B-cell
nTPM: 1109.7
Samples: 6

Max nTPM: 1305.0
Min nTPM: 1016.0
P10809_1011 1081.1
P10809_1029 1016.0
P10809_1048 1056.7
P10809_1067 1122.4
P10809_1091 1076.7
P10809_1104 1305.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2582.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1953.0
Samples: 4

Max nTPM: 3024.8
Min nTPM: 1311.4
RHH5310_R3677 3024.8
RHH5218_R3590 1419.1
RHH5247_R3619 2056.8
RHH5276_R3648 1311.4
Naive B-cell
nTPM: 2289.4
Samples: 4

Max nTPM: 3358.4
Min nTPM: 1770.3
RHH5308_R3675 3358.4
RHH5216_R3588 2187.3
RHH5245_R3617 1841.6
RHH5274_R3646 1770.3
Non-switched memory B-cell
nTPM: 2287.5
Samples: 4

Max nTPM: 3370.1
Min nTPM: 1518.5
RHH5309_R3676 3370.1
RHH5217_R3589 2071.4
RHH5246_R3618 2190.1
RHH5275_R3647 1518.5
Plasmablast
nTPM: 2170.3
Samples: 4

Max nTPM: 2517.1
Min nTPM: 1757.4
RHH5312_R3679 2439.9
RHH5220_R3592 1966.7
RHH5249_R3621 2517.1
RHH5278_R3650 1757.4
Switched memory B-cell
nTPM: 2582.4
Samples: 4

Max nTPM: 4261.1
Min nTPM: 1482.8
RHH5311_R3678 4261.1
RHH5219_R3591 2624.0
RHH5248_R3620 1961.7
RHH5277_R3649 1482.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1264.4
Schmiedel sample id TPM
Naive B-cell
TPM: 1264.4
Samples: 91

Max TPM: 1589.2
Min TPM: 811.7
B_CELL_NAIVE_1 1589.2
B_CELL_NAIVE_2 1470.0
B_CELL_NAIVE_3 1450.0
B_CELL_NAIVE_4 1418.5
B_CELL_NAIVE_5 1405.9
B_CELL_NAIVE_6 1404.6
B_CELL_NAIVE_7 1402.7
B_CELL_NAIVE_8 1401.7
B_CELL_NAIVE_9 1401.1
B_CELL_NAIVE_10 1398.2
B_CELL_NAIVE_11 1397.8
B_CELL_NAIVE_12 1397.5
B_CELL_NAIVE_13 1397.0
B_CELL_NAIVE_14 1390.7
B_CELL_NAIVE_15 1383.8
B_CELL_NAIVE_16 1381.8
B_CELL_NAIVE_17 1381.1
B_CELL_NAIVE_18 1363.6
B_CELL_NAIVE_19 1361.1
B_CELL_NAIVE_20 1356.4
B_CELL_NAIVE_21 1356.0
B_CELL_NAIVE_22 1356.0
B_CELL_NAIVE_23 1346.6
B_CELL_NAIVE_24 1345.8
B_CELL_NAIVE_25 1345.2
B_CELL_NAIVE_26 1343.9
B_CELL_NAIVE_27 1337.9
B_CELL_NAIVE_28 1336.0
B_CELL_NAIVE_29 1331.3
B_CELL_NAIVE_30 1325.1
B_CELL_NAIVE_31 1320.8
B_CELL_NAIVE_32 1319.0
B_CELL_NAIVE_33 1318.8
B_CELL_NAIVE_34 1315.8
B_CELL_NAIVE_35 1313.0
B_CELL_NAIVE_36 1309.2
B_CELL_NAIVE_37 1306.6
B_CELL_NAIVE_38 1304.9
B_CELL_NAIVE_39 1304.3
B_CELL_NAIVE_40 1302.1
B_CELL_NAIVE_41 1301.7
B_CELL_NAIVE_42 1295.2
B_CELL_NAIVE_43 1285.8
B_CELL_NAIVE_44 1277.2
B_CELL_NAIVE_45 1276.5
B_CELL_NAIVE_46 1272.6
B_CELL_NAIVE_47 1264.9
B_CELL_NAIVE_48 1264.5
B_CELL_NAIVE_49 1264.1
B_CELL_NAIVE_50 1251.7
B_CELL_NAIVE_51 1248.9
B_CELL_NAIVE_52 1238.3
B_CELL_NAIVE_53 1238.2
B_CELL_NAIVE_54 1237.6
B_CELL_NAIVE_55 1228.7
B_CELL_NAIVE_56 1222.9
B_CELL_NAIVE_57 1222.9
B_CELL_NAIVE_58 1221.5
B_CELL_NAIVE_59 1214.8
B_CELL_NAIVE_60 1213.1
B_CELL_NAIVE_61 1212.9
B_CELL_NAIVE_62 1207.7
B_CELL_NAIVE_63 1206.2
B_CELL_NAIVE_64 1203.9
B_CELL_NAIVE_65 1202.4
B_CELL_NAIVE_66 1197.5
B_CELL_NAIVE_67 1195.5
B_CELL_NAIVE_68 1192.9
B_CELL_NAIVE_69 1190.6
B_CELL_NAIVE_70 1178.2
B_CELL_NAIVE_71 1177.3
B_CELL_NAIVE_72 1176.2
B_CELL_NAIVE_73 1166.9
B_CELL_NAIVE_74 1165.0
B_CELL_NAIVE_75 1159.2
B_CELL_NAIVE_76 1159.0
B_CELL_NAIVE_77 1155.8
B_CELL_NAIVE_78 1146.3
B_CELL_NAIVE_79 1143.9
B_CELL_NAIVE_80 1139.4
B_CELL_NAIVE_81 1123.5
B_CELL_NAIVE_82 1120.7
B_CELL_NAIVE_83 1119.9
B_CELL_NAIVE_84 1116.8
B_CELL_NAIVE_85 1116.3
B_CELL_NAIVE_86 1110.4
B_CELL_NAIVE_87 1110.3
B_CELL_NAIVE_88 1096.4
B_CELL_NAIVE_89 1019.6
B_CELL_NAIVE_90 1009.8
B_CELL_NAIVE_91 811.7
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