A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
666.4
nTPM
Monaco:
1265.6
nTPM
Schmiedel:
721.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
666.4
HPA sample
nTPM
Classical monocyte nTPM: 666.4
Samples: 6
Max nTPM: 1394.3
Min nTPM: 355.2
P10809_1003
1394.3
P10809_1020
666.2
P10809_1039
441.9
P10809_1058
498.0
P10809_1080
355.2
P10809_1107
642.8
Intermediate monocyte nTPM: 619.4
Samples: 6
Max nTPM: 854.5
Min nTPM: 400.2
P10809_1004
564.1
P10809_1023
719.2
P10809_1042
573.2
P10809_1061
605.4
P10809_1081
400.2
P10809_1108
854.5
Non-classical monocyte nTPM: 554.6
Samples: 5
Max nTPM: 699.0
Min nTPM: 375.4
P10809_1005
670.7
P10809_1053
470.3
P10809_1072
557.7
P10809_1082
375.4
P10809_1109
699.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1265.6
Monaco sample
nTPM
Classical monocyte nTPM: 1265.6
Samples: 4
Max nTPM: 1838.9
Min nTPM: 701.7
RHH5313_R3680
1112.8
RHH5221_R3593
701.7
RHH5250_R3622
1838.9
RHH5279_R3651
1409.1
Intermediate monocyte nTPM: 1190.8
Samples: 4
Max nTPM: 1583.6
Min nTPM: 657.5
RHH5314_R3681
1583.6
RHH5222_R3594
657.5
RHH5251_R3623
976.8
RHH5280_R3652
1545.1
Non-classical monocyte nTPM: 847.5
Samples: 4
Max nTPM: 1105.2
Min nTPM: 512.6
RHH5315_R3682
977.0
RHH5223_R3595
512.6
RHH5252_R3624
795.2
RHH5281_R3653
1105.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
721.6
Schmiedel sample id
TPM
Classical monocyte TPM: 721.6
Samples: 91
Max TPM: 926.1
Min TPM: 514.3
MONOCYTES_1
926.1
MONOCYTES_2
890.8
MONOCYTES_3
885.1
MONOCYTES_4
882.2
MONOCYTES_5
865.6
MONOCYTES_6
847.5
MONOCYTES_7
845.9
MONOCYTES_8
837.7
MONOCYTES_9
830.1
MONOCYTES_10
829.2
MONOCYTES_11
823.8
MONOCYTES_12
809.1
MONOCYTES_13
803.8
MONOCYTES_14
800.3
MONOCYTES_15
799.2
MONOCYTES_16
796.7
MONOCYTES_17
791.5
MONOCYTES_18
788.3
MONOCYTES_19
788.0
MONOCYTES_20
787.1
MONOCYTES_21
784.9
MONOCYTES_22
784.5
MONOCYTES_23
782.2
MONOCYTES_24
779.1
MONOCYTES_25
775.5
MONOCYTES_26
774.7
MONOCYTES_27
771.2
MONOCYTES_28
767.8
MONOCYTES_29
757.8
MONOCYTES_30
749.4
MONOCYTES_31
745.0
MONOCYTES_32
745.0
MONOCYTES_33
744.9
MONOCYTES_34
743.6
MONOCYTES_35
743.0
MONOCYTES_36
742.7
MONOCYTES_37
742.6
MONOCYTES_38
738.5
MONOCYTES_39
737.6
MONOCYTES_40
732.0
MONOCYTES_41
731.1
MONOCYTES_42
727.0
MONOCYTES_43
726.7
MONOCYTES_44
726.5
MONOCYTES_45
722.1
MONOCYTES_46
718.0
MONOCYTES_47
715.0
MONOCYTES_48
713.6
MONOCYTES_49
712.6
MONOCYTES_50
712.3
MONOCYTES_51
709.4
MONOCYTES_52
708.5
MONOCYTES_53
707.2
MONOCYTES_54
705.2
MONOCYTES_55
704.4
MONOCYTES_56
703.8
MONOCYTES_57
694.5
MONOCYTES_58
693.3
MONOCYTES_59
687.4
MONOCYTES_60
687.3
MONOCYTES_61
681.6
MONOCYTES_62
680.4
MONOCYTES_63
674.8
MONOCYTES_64
674.7
MONOCYTES_65
672.2
MONOCYTES_66
671.2
MONOCYTES_67
665.9
MONOCYTES_68
664.5
MONOCYTES_69
663.6
MONOCYTES_70
661.3
MONOCYTES_71
660.6
MONOCYTES_72
659.5
MONOCYTES_73
658.8
MONOCYTES_74
658.7
MONOCYTES_75
656.9
MONOCYTES_76
648.9
MONOCYTES_77
645.8
MONOCYTES_78
645.2
MONOCYTES_79
643.0
MONOCYTES_80
633.6
MONOCYTES_81
621.6
MONOCYTES_82
618.3
MONOCYTES_83
613.0
MONOCYTES_84
607.2
MONOCYTES_85
606.9
MONOCYTES_86
601.9
MONOCYTES_87
577.7
MONOCYTES_88
573.5
MONOCYTES_89
569.1
MONOCYTES_90
564.6
MONOCYTES_91
514.3
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Non-classical monocyte TPM: 599.8
Samples: 90
Max TPM: 829.5
Min TPM: 461.3
M2_1
829.5
M2_2
751.8
M2_3
735.6
M2_4
732.4
M2_5
726.7
M2_6
716.6
M2_7
700.6
M2_8
698.1
M2_9
697.7
M2_10
694.1
M2_11
690.1
M2_12
689.0
M2_13
687.3
M2_14
679.7
M2_15
668.8
M2_16
667.1
M2_17
655.5
M2_18
653.3
M2_19
653.2
M2_20
650.0
M2_21
647.0
M2_22
646.5
M2_23
642.0
M2_24
640.7
M2_25
638.4
M2_26
637.8
M2_27
636.1
M2_28
635.9
M2_29
634.1
M2_30
633.4
M2_31
626.3
M2_32
620.9
M2_33
620.3
M2_34
619.3
M2_35
615.4
M2_36
614.4
M2_37
613.5
M2_38
612.2
M2_39
608.0
M2_40
605.7
M2_41
603.9
M2_42
600.7
M2_43
598.7
M2_44
592.0
M2_45
589.8
M2_46
585.8
M2_47
583.3
M2_48
583.3
M2_49
579.2
M2_50
575.2
M2_51
574.9
M2_52
574.3
M2_53
574.1
M2_54
574.0
M2_55
572.0
M2_56
571.2
M2_57
571.1
M2_58
568.3
M2_59
566.4
M2_60
561.7
M2_61
560.7
M2_62
560.6
M2_63
559.9
M2_64
557.5
M2_65
556.0
M2_66
555.2
M2_67
554.5
M2_68
553.5
M2_69
553.1
M2_70
548.5
M2_71
547.8
M2_72
546.9
M2_73
546.8
M2_74
541.5
M2_75
536.9
M2_76
534.6
M2_77
529.5
M2_78
528.9
M2_79
525.1
M2_80
524.6
M2_81
524.5
M2_82
518.0
M2_83
515.7
M2_84
509.5
M2_85
496.1
M2_86
489.7
M2_87
484.1
M2_88
477.5
M2_89
462.5
M2_90
461.3
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