A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1007.9
nTPM
Monaco:
826.9
nTPM
Schmiedel:
701.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1007.9
HPA sample
nTPM
NK-cell nTPM: 1007.9
Samples: 6
Max nTPM: 1323.4
Min nTPM: 563.0
P10809_1013
1323.4
P10809_1033
863.9
P10809_1052
972.0
P10809_1071
1109.0
P10809_1093
563.0
P10809_1103
1216.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
826.9
Monaco sample
nTPM
NK-cell nTPM: 826.9
Samples: 4
Max nTPM: 1029.5
Min nTPM: 564.5
RHH5316_R3683
1029.5
RHH5224_R3596
853.4
RHH5253_R3625
564.5
RHH5282_R3654
860.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
701.7
Schmiedel sample id
TPM
NK-cell TPM: 701.7
Samples: 90
Max TPM: 941.0
Min TPM: 510.4
NK_1
941.0
NK_2
907.6
NK_3
903.7
NK_4
899.6
NK_5
896.8
NK_6
888.4
NK_7
867.9
NK_8
845.2
NK_9
839.4
NK_10
832.6
NK_11
832.4
NK_12
828.2
NK_13
806.1
NK_14
804.8
NK_15
801.6
NK_16
795.9
NK_17
795.1
NK_18
778.3
NK_19
770.0
NK_20
768.8
NK_21
767.7
NK_22
765.0
NK_23
765.0
NK_24
753.8
NK_25
750.0
NK_26
747.7
NK_27
746.6
NK_28
745.6
NK_29
745.5
NK_30
744.0
NK_31
733.3
NK_32
728.7
NK_33
720.7
NK_34
720.0
NK_35
719.3
NK_36
714.3
NK_37
713.0
NK_38
710.6
NK_39
706.5
NK_40
704.4
NK_41
703.5
NK_42
703.1
NK_43
699.1
NK_44
698.5
NK_45
692.7
NK_46
692.2
NK_47
691.3
NK_48
688.2
NK_49
683.8
NK_50
681.4
NK_51
677.7
NK_52
675.9
NK_53
671.1
NK_54
664.8
NK_55
661.3
NK_56
659.0
NK_57
655.2
NK_58
653.0
NK_59
644.8
NK_60
643.4
NK_61
643.4
NK_62
643.3
NK_63
643.2
NK_64
639.7
NK_65
637.2
NK_66
636.8
NK_67
635.2
NK_68
634.4
NK_69
634.3
NK_70
632.8
NK_71
626.4
NK_72
623.1
NK_73
622.5
NK_74
621.9
NK_75
613.8
NK_76
605.3
NK_77
604.1
NK_78
603.2
NK_79
602.5
NK_80
600.7
NK_81
597.9
NK_82
597.8
NK_83
577.9
NK_84
572.0
NK_85
569.7
NK_86
559.9
NK_87
552.0
NK_88
549.6
NK_89
520.3
NK_90
510.4
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