On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3751.0
nTPM
HPA Brain:
5570.3
nTPM
GTEx:
3751.0
nTPM
FANTOM5:
8755.6
Scaled Tags Per Million
Macaque:
2370.4
nTPM
Mouse:
2377.1
nTPM
Rat:
3682.1
nTPM
Pig:
4360.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5570.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 4218.5
2411
Female, age 72, unknown
6162.0
1830
Male, age 51, unknown
5610.1
1870
Female, age 42, unknown
5447.1
2019
Male, age 18, unknown
5341.7
1833
Male, age 53, unknown
5322.0
2828
Female, age 72, unknown
4135.4
2219
Male, age 76, both hemispheres
3184.1
1827
Male, age 72, unknown
2906.4
2666
Male, age 74, left hemisphere
2393.7
2586
Male, age 75, left hemisphere
1682.1
Dorsal raphe nucleus nTPM: 3352.2
2750
Male, age 76, both hemispheres
6767.0
2016
Female, age 72, unknown
3553.3
1828
Male, age 53, unknown
2902.9
2298
Female, age 72, unknown
1817.9
2047
Male, age 72, unknown
1720.2
Inferior colliculus nTPM: 2647.8
1848
Female, age 42, unknown
2901.3
1890
Male, age 53, unknown
2803.0
2849
Male, age 72, unknown
2548.8
2097
Female, age 72, unknown
2338.3
Median raphe nucleus nTPM: 2923.6
2220
Male, age 76, midline
2923.6
Periaquaductal grey, anterior nTPM: 2406.8
2502
Female, age 75, unknown
3163.8
1947
Male, age 18, unknown
2342.0
1795
Male, age 51, unknown
1714.5
Periaquaductal grey, dorsal nTPM: 1704.0
2464
Female, age 72, unknown
2998.6
1831
Male, age 72, unknown
1977.8
2850
Male, age 76, both hemispheres
944.8
1840
Male, age 53, unknown
895.0
Periaquaductal grey, lateral nTPM: 2147.1
2272
Male, age 74, both hemispheres
2932.2
2053
Male, age 18, unknown
2495.8
2140
Male, age 76, both hemispheres
1013.4
Pretectal area nTPM: 2624.4
2316
Male, age 76, right hemisphere
4110.1
1815
Male, age 53, unknown
3729.4
2407
Male, age 75, both hemispheres
3371.3
1817
Female, age 42, unknown
2898.1
2273
Male, age 74, both hemispheres
2808.8
2825
Male, age 18, unknown
2673.3
2007
Male, age 72, unknown
2671.8
2224
Female, age 72, unknown
2147.7
1944
Female, age 72, unknown
1553.1
2667
Female, age 75, unknown
1525.2
1816
Male, age 51, unknown
1379.3
Red nucleus nTPM: 5570.3
1865
Male, age 51, unknown
7401.1
1821
Female, age 72, unknown
7379.6
2823
Male, age 76, right hemisphere
7096.5
1904
Male, age 53, unknown
6472.2
2785
Male, age 18, unknown
5979.8
2769
Male, age 72, unknown
5757.1
2227
Male, age 72, unknown
5672.7
2503
Female, age 72, unknown
5429.9
1954
Female, age 42, unknown
5218.1
2725
Female, age 75, unknown
3833.8
2588
Male, age 74, left hemisphere
3313.4
2584
Male, age 75, left hemisphere
3289.3
Substantia nigra nTPM: 2779.6
2590
Female, age 75, unknown
3643.1
1851
Male, age 51, unknown
3434.5
1889
Female, age 72, unknown
3411.7
2409
Female, age 72, unknown
3226.1
2583
Male, age 75, right hemisphere
2921.0
2241
Male, age 72, unknown
2495.9
2699
Male, age 18, unknown
2482.6
1941
Male, age 53, unknown
2447.8
1916
Female, age 42, unknown
2135.1
2665
Male, age 74, both hemispheres
1598.5
Superior colliculus nTPM: 3552.7
1913
Female, age 42, unknown
5411.4
1995
Male, age 72, unknown
5147.3
1895
Male, age 76, right hemisphere
4766.7
2587
Male, age 74, left hemisphere
4575.1
2668
Female, age 75, unknown
4019.4
1839
Male, age 51, unknown
3742.6
1796
Male, age 53, unknown
2676.1
2087
Female, age 72, unknown
1965.6
2261
Male, age 18, unknown
1664.9
2664
Male, age 75, both hemispheres
1557.5
Ventral tegmental area nTPM: 3689.9
2223
Female, age 72, unknown
5874.2
2410
Female, age 72, unknown
4277.0
2218
Male, age 76, both hemispheres
3264.7
2021
Male, age 53, unknown
3046.2
1942
Male, age 51, unknown
2976.5
1915
Female, age 42, unknown
2700.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3751.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3751.0
Samples: 183
Max nTPM: 13033.1
Min nTPM: 187.8
Std nTPM: 2051.7
Median nTPM: 3259.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13033.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
9895.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
9850.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
9218.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8906.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8518.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
8154.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
8126.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
7995.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7886.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
7883.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7826.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
7799.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7454.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7161.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6952.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6788.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
6572.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6330.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6311.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6301.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
6156.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
6077.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6056.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
5953.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
5894.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
5852.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
5673.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5652.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
5569.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5568.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
5532.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
5474.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
5421.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5334.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5293.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
5157.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5047.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
5016.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5004.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
4986.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
4953.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
4839.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
4815.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
4810.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4725.8
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
4694.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
4639.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4637.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
4571.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4548.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
4517.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
4495.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
4429.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
4423.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4400.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
4373.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
4372.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
4312.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
4192.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
4164.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4163.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
4082.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
4030.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
3891.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
3876.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
3839.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
3810.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3802.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
3799.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3741.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
3708.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
3685.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3628.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3620.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3610.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
3590.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
3578.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3569.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3560.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
3538.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3435.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
3434.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
3424.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3403.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3373.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3364.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
3357.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3302.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3277.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3266.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
3259.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
3191.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3188.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
3183.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3146.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3090.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
3059.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
3021.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
3005.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2969.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2960.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2952.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
2942.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2942.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2936.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2914.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2913.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2880.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2862.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2855.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2851.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2851.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2843.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2807.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2799.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2790.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2769.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
2751.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2744.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
2741.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2733.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2707.8
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
2684.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
2664.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2588.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2583.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
2572.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
2565.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2540.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
2530.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
2471.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2470.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2467.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2456.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2453.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2429.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2423.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2419.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2396.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2371.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2361.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
2318.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
2228.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2224.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
2167.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
2140.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2124.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
2093.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2076.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2030.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2003.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1985.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1950.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1867.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1847.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1827.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1827.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1814.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1814.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1810.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1787.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1781.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1762.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1752.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1672.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1671.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1649.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1635.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1555.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1475.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1386.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1368.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1335.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1188.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1016.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1014.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
925.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
890.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
761.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
659.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
321.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
187.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2370.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 2370.4
Samples: 1
Max nTPM: 2370.4
Min nTPM: 2370.4
Sample A
2370.4
Midbrain nTPM: 1176.0
Samples: 1
Max nTPM: 1176.0
Min nTPM: 1176.0
Sample A
1176.0
Superior colliculi nTPM: 1593.3
Samples: 1
Max nTPM: 1593.3
Min nTPM: 1593.3
Sample A
1593.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4360.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 4008.6
Samples: 3
Max nTPM: 5323.3
Min nTPM: 2820.4
Sample A
Female
5323.3
Sample B
Female
2820.4
Sample C
Male
3882.0
Midbrain nTPM: 3593.8
Samples: 3
Max nTPM: 5439.3
Min nTPM: 2542.3
Sample B
Female
5439.3
Sample C
Male
2542.3
Sample D
Male
2799.8
Periaqueductal gray nTPM: 3456.7
Samples: 3
Max nTPM: 4295.4
Min nTPM: 2258.3
Sample B
Female
4295.4
Sample C
Male
2258.3
Sample D
Male
3816.3
Superior colliculi nTPM: 4360.6
Samples: 4
Max nTPM: 5785.6
Min nTPM: 2176.9
Sample A
Female
4911.5
Sample B
Female
2176.9
Sample C
Male
4568.4
Sample D
Male
5785.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2377.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2377.1
Samples: 4
Max nTPM: 2692.8
Min nTPM: 2059.9
Sample A
2134.5
Sample B
2059.9
Sample C
2621.1
Sample D
2692.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3682.1
Rat sample
Sample description
nTPM
Midbrain nTPM: 3682.1
Samples: 4
Max nTPM: 4276.3
Min nTPM: 3237.8
Sample A
3237.8
Sample A
4276.3
Sample A
3970.7
Sample A
3243.7
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The Human Protein Atlas project is funded
