MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:146.5 nTPM
GTEx:12.8 nTPM
FANTOM5:136.4 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:12.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 146.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.0
1830 Male, age 51, unknown 161.3
1833 Male, age 53, unknown 161.3
2219 Male, age 76, both hemispheres 151.5
1870 Female, age 42, unknown 149.1
2666 Male, age 74, left hemisphere 128.7
2828 Female, age 72, unknown 127.0
2411 Female, age 72, unknown 124.1
1827 Male, age 72, unknown 114.3
2019 Male, age 18, unknown 114.3
2586 Male, age 75, left hemisphere 108.2
Dorsal raphe nucleus
nTPM: 119.2
2016 Female, age 72, unknown 139.6
2750 Male, age 76, both hemispheres 129.5
1828 Male, age 53, unknown 122.3
2047 Male, age 72, unknown 110.9
2298 Female, age 72, unknown 93.9
Inferior colliculus
nTPM: 130.4
2849 Male, age 72, unknown 153.3
1848 Female, age 42, unknown 134.1
1890 Male, age 53, unknown 129.6
2097 Female, age 72, unknown 104.8
Median raphe nucleus
nTPM: 114.7
2220 Male, age 76, midline 114.7
Periaquaductal grey, anterior
nTPM: 104.8
2502 Female, age 75, unknown 107.9
1947 Male, age 18, unknown 107.3
1795 Male, age 51, unknown 99.3
Periaquaductal grey, dorsal
nTPM: 140.5
1831 Male, age 72, unknown 160.6
2850 Male, age 76, both hemispheres 159.6
2464 Female, age 72, unknown 125.0
1840 Male, age 53, unknown 116.8
Periaquaductal grey, lateral
nTPM: 126.9
2140 Male, age 76, both hemispheres 147.5
2053 Male, age 18, unknown 126.9
2272 Male, age 74, both hemispheres 106.3
Pretectal area
nTPM: 121.6
2667 Female, age 75, unknown 149.3
2316 Male, age 76, right hemisphere 137.1
2407 Male, age 75, both hemispheres 134.3
1815 Male, age 53, unknown 130.8
2825 Male, age 18, unknown 124.0
2224 Female, age 72, unknown 116.9
1944 Female, age 72, unknown 116.2
2273 Male, age 74, both hemispheres 115.3
1817 Female, age 42, unknown 112.8
1816 Male, age 51, unknown 102.0
2007 Male, age 72, unknown 98.9
Red nucleus
nTPM: 146.5
2503 Female, age 72, unknown 172.0
1865 Male, age 51, unknown 169.1
1904 Male, age 53, unknown 158.8
2823 Male, age 76, right hemisphere 157.1
1954 Female, age 42, unknown 150.9
2769 Male, age 72, unknown 146.1
2588 Male, age 74, left hemisphere 144.5
2227 Male, age 72, unknown 144.3
1821 Female, age 72, unknown 136.6
2725 Female, age 75, unknown 135.6
2785 Male, age 18, unknown 133.2
2584 Male, age 75, left hemisphere 110.2
Substantia nigra
nTPM: 120.7
2699 Male, age 18, unknown 169.0
2409 Female, age 72, unknown 143.5
2583 Male, age 75, right hemisphere 131.1
2665 Male, age 74, both hemispheres 120.4
2590 Female, age 75, unknown 116.9
1889 Female, age 72, unknown 111.8
1851 Male, age 51, unknown 106.0
2241 Male, age 72, unknown 105.7
1941 Male, age 53, unknown 101.4
1916 Female, age 42, unknown 101.2
Superior colliculus
nTPM: 130.3
1913 Female, age 42, unknown 171.7
1995 Male, age 72, unknown 160.7
1895 Male, age 76, right hemisphere 145.2
2587 Male, age 74, left hemisphere 134.0
1839 Male, age 51, unknown 132.3
1796 Male, age 53, unknown 117.1
2664 Male, age 75, both hemispheres 113.6
2668 Female, age 75, unknown 110.5
2087 Female, age 72, unknown 109.6
2261 Male, age 18, unknown 108.3
Ventral tegmental area
nTPM: 123.8
2223 Female, age 72, unknown 138.6
2218 Male, age 76, both hemispheres 127.6
2021 Male, age 53, unknown 127.3
2410 Female, age 72, unknown 121.6
1942 Male, age 51, unknown 119.3
1915 Female, age 42, unknown 108.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 183

Max nTPM: 31.6
Min nTPM: 4.6
Std nTPM: 4.5
Median nTPM: 12.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 31.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 28.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 23.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 23.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 22.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 22.1
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 22.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 21.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 20.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 136.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.4
FF:10158-103A5 76 years, female 136.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.4
Samples: 4

Max nTPM: 36.0
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 27.2
Sample C Male 23.8
Sample D Male 36.0
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 19.8
Sample A Female 26.0
Sample B Female 31.0
Sample C Male 19.8
Sample D Male 23.6
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 30.5
Min nTPM: 22.0
Sample B Female 30.5
Sample C Male 22.0
Sample D Male 28.2
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 26.2
Min nTPM: 19.3
Sample A Female 19.3
Sample B Female 25.2
Sample C Male 24.8
Sample D Male 26.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.2
Sample A Male 11.2
Sample B Male 11.7
Sample C Female 11.9
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68845615 Antisense, RP_050224_02_B07, Mouse strain C57BL/6J (56 days, male) 0.1

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