A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
70.5
nTPM
Schmiedel:
178.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Memory B-cell nTPM: 4.7
Samples: 6
Max nTPM: 8.8
Min nTPM: 1.3
P10809_1017
5.9
P10809_1025
4.6
P10809_1044
1.3
P10809_1063
4.6
P10809_1092
3.1
P10809_1105
8.8
Naive B-cell nTPM: 3.6
Samples: 6
Max nTPM: 5.6
Min nTPM: 1.1
P10809_1011
3.8
P10809_1029
2.9
P10809_1048
1.1
P10809_1067
4.4
P10809_1091
4.0
P10809_1104
5.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 63.8
Samples: 4
Max nTPM: 71.3
Min nTPM: 45.1
RHH5310_R3677
45.1
RHH5218_R3590
67.9
RHH5247_R3619
70.8
RHH5276_R3648
71.3
Naive B-cell nTPM: 60.8
Samples: 4
Max nTPM: 80.4
Min nTPM: 49.1
RHH5308_R3675
49.2
RHH5216_R3588
80.4
RHH5245_R3617
64.4
RHH5274_R3646
49.1
Non-switched memory B-cell nTPM: 59.1
Samples: 4
Max nTPM: 68.8
Min nTPM: 42.7
RHH5309_R3676
42.7
RHH5217_R3589
68.8
RHH5246_R3618
60.2
RHH5275_R3647
64.5
Plasmablast nTPM: 48.1
Samples: 4
Max nTPM: 61.2
Min nTPM: 41.0
RHH5312_R3679
41.0
RHH5220_R3592
61.2
RHH5249_R3621
48.6
RHH5278_R3650
41.4
Switched memory B-cell nTPM: 70.5
Samples: 4
Max nTPM: 86.1
Min nTPM: 54.2
RHH5311_R3678
54.2
RHH5219_R3591
70.8
RHH5248_R3620
86.1
RHH5277_R3649
70.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
178.5
Schmiedel sample id
TPM
Naive B-cell TPM: 178.5
Samples: 91
Max TPM: 297.7
Min TPM: 97.1
B_CELL_NAIVE_1
297.7
B_CELL_NAIVE_2
270.7
B_CELL_NAIVE_3
267.2
B_CELL_NAIVE_4
244.2
B_CELL_NAIVE_5
238.0
B_CELL_NAIVE_6
237.7
B_CELL_NAIVE_7
237.4
B_CELL_NAIVE_8
234.6
B_CELL_NAIVE_9
230.2
B_CELL_NAIVE_10
222.8
B_CELL_NAIVE_11
219.3
B_CELL_NAIVE_12
217.6
B_CELL_NAIVE_13
216.4
B_CELL_NAIVE_14
208.8
B_CELL_NAIVE_15
204.9
B_CELL_NAIVE_16
200.0
B_CELL_NAIVE_17
199.1
B_CELL_NAIVE_18
198.9
B_CELL_NAIVE_19
198.7
B_CELL_NAIVE_20
196.5
B_CELL_NAIVE_21
195.9
B_CELL_NAIVE_22
194.2
B_CELL_NAIVE_23
193.8
B_CELL_NAIVE_24
192.8
B_CELL_NAIVE_25
191.4
B_CELL_NAIVE_26
189.8
B_CELL_NAIVE_27
189.8
B_CELL_NAIVE_28
189.6
B_CELL_NAIVE_29
189.1
B_CELL_NAIVE_30
188.4
B_CELL_NAIVE_31
188.2
B_CELL_NAIVE_32
187.5
B_CELL_NAIVE_33
187.1
B_CELL_NAIVE_34
186.9
B_CELL_NAIVE_35
186.4
B_CELL_NAIVE_36
183.6
B_CELL_NAIVE_37
182.7
B_CELL_NAIVE_38
180.7
B_CELL_NAIVE_39
180.7
B_CELL_NAIVE_40
180.3
B_CELL_NAIVE_41
179.4
B_CELL_NAIVE_42
177.0
B_CELL_NAIVE_43
176.6
B_CELL_NAIVE_44
176.5
B_CELL_NAIVE_45
176.2
B_CELL_NAIVE_46
175.6
B_CELL_NAIVE_47
175.4
B_CELL_NAIVE_48
175.4
B_CELL_NAIVE_49
174.2
B_CELL_NAIVE_50
173.0
B_CELL_NAIVE_51
172.3
B_CELL_NAIVE_52
171.8
B_CELL_NAIVE_53
169.2
B_CELL_NAIVE_54
168.0
B_CELL_NAIVE_55
165.0
B_CELL_NAIVE_56
164.5
B_CELL_NAIVE_57
163.0
B_CELL_NAIVE_58
162.1
B_CELL_NAIVE_59
161.9
B_CELL_NAIVE_60
160.6
B_CELL_NAIVE_61
160.5
B_CELL_NAIVE_62
160.5
B_CELL_NAIVE_63
159.2
B_CELL_NAIVE_64
158.6
B_CELL_NAIVE_65
158.6
B_CELL_NAIVE_66
156.6
B_CELL_NAIVE_67
155.6
B_CELL_NAIVE_68
155.3
B_CELL_NAIVE_69
154.8
B_CELL_NAIVE_70
154.6
B_CELL_NAIVE_71
152.4
B_CELL_NAIVE_72
151.8
B_CELL_NAIVE_73
151.0
B_CELL_NAIVE_74
150.8
B_CELL_NAIVE_75
150.5
B_CELL_NAIVE_76
150.4
B_CELL_NAIVE_77
149.5
B_CELL_NAIVE_78
147.7
B_CELL_NAIVE_79
146.1
B_CELL_NAIVE_80
144.1
B_CELL_NAIVE_81
142.9
B_CELL_NAIVE_82
142.6
B_CELL_NAIVE_83
141.8
B_CELL_NAIVE_84
141.5
B_CELL_NAIVE_85
140.5
B_CELL_NAIVE_86
140.4
B_CELL_NAIVE_87
137.7
B_CELL_NAIVE_88
136.9
B_CELL_NAIVE_89
122.6
B_CELL_NAIVE_90
111.6
B_CELL_NAIVE_91
97.1
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