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BETA
  • SUMMARY

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  • BRAIN

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  • RAP2C
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:4.7 nTPM
Monaco:70.5 nTPM
Schmiedel:178.5 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

4.7
HPA sample nTPM
Memory B-cell
nTPM: 4.7
Samples: 6

Max nTPM: 8.8
Min nTPM: 1.3
P10809_1017 5.9
P10809_1025 4.6
P10809_1044 1.3
P10809_1063 4.6
P10809_1092 3.1
P10809_1105 8.8
Naive B-cell
nTPM: 3.6
Samples: 6

Max nTPM: 5.6
Min nTPM: 1.1
P10809_1011 3.8
P10809_1029 2.9
P10809_1048 1.1
P10809_1067 4.4
P10809_1091 4.0
P10809_1104 5.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

70.5
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 63.8
Samples: 4

Max nTPM: 71.3
Min nTPM: 45.1
RHH5310_R3677 45.1
RHH5218_R3590 67.9
RHH5247_R3619 70.8
RHH5276_R3648 71.3
Naive B-cell
nTPM: 60.8
Samples: 4

Max nTPM: 80.4
Min nTPM: 49.1
RHH5308_R3675 49.2
RHH5216_R3588 80.4
RHH5245_R3617 64.4
RHH5274_R3646 49.1
Non-switched memory B-cell
nTPM: 59.1
Samples: 4

Max nTPM: 68.8
Min nTPM: 42.7
RHH5309_R3676 42.7
RHH5217_R3589 68.8
RHH5246_R3618 60.2
RHH5275_R3647 64.5
Plasmablast
nTPM: 48.1
Samples: 4

Max nTPM: 61.2
Min nTPM: 41.0
RHH5312_R3679 41.0
RHH5220_R3592 61.2
RHH5249_R3621 48.6
RHH5278_R3650 41.4
Switched memory B-cell
nTPM: 70.5
Samples: 4

Max nTPM: 86.1
Min nTPM: 54.2
RHH5311_R3678 54.2
RHH5219_R3591 70.8
RHH5248_R3620 86.1
RHH5277_R3649 70.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

178.5
Schmiedel sample id TPM
Naive B-cell
TPM: 178.5
Samples: 91

Max TPM: 297.7
Min TPM: 97.1
B_CELL_NAIVE_1 297.7
B_CELL_NAIVE_2 270.7
B_CELL_NAIVE_3 267.2
B_CELL_NAIVE_4 244.2
B_CELL_NAIVE_5 238.0
B_CELL_NAIVE_6 237.7
B_CELL_NAIVE_7 237.4
B_CELL_NAIVE_8 234.6
B_CELL_NAIVE_9 230.2
B_CELL_NAIVE_10 222.8
B_CELL_NAIVE_11 219.3
B_CELL_NAIVE_12 217.6
B_CELL_NAIVE_13 216.4
B_CELL_NAIVE_14 208.8
B_CELL_NAIVE_15 204.9
B_CELL_NAIVE_16 200.0
B_CELL_NAIVE_17 199.1
B_CELL_NAIVE_18 198.9
B_CELL_NAIVE_19 198.7
B_CELL_NAIVE_20 196.5
B_CELL_NAIVE_21 195.9
B_CELL_NAIVE_22 194.2
B_CELL_NAIVE_23 193.8
B_CELL_NAIVE_24 192.8
B_CELL_NAIVE_25 191.4
B_CELL_NAIVE_26 189.8
B_CELL_NAIVE_27 189.8
B_CELL_NAIVE_28 189.6
B_CELL_NAIVE_29 189.1
B_CELL_NAIVE_30 188.4
B_CELL_NAIVE_31 188.2
B_CELL_NAIVE_32 187.5
B_CELL_NAIVE_33 187.1
B_CELL_NAIVE_34 186.9
B_CELL_NAIVE_35 186.4
B_CELL_NAIVE_36 183.6
B_CELL_NAIVE_37 182.7
B_CELL_NAIVE_38 180.7
B_CELL_NAIVE_39 180.7
B_CELL_NAIVE_40 180.3
B_CELL_NAIVE_41 179.4
B_CELL_NAIVE_42 177.0
B_CELL_NAIVE_43 176.6
B_CELL_NAIVE_44 176.5
B_CELL_NAIVE_45 176.2
B_CELL_NAIVE_46 175.6
B_CELL_NAIVE_47 175.4
B_CELL_NAIVE_48 175.4
B_CELL_NAIVE_49 174.2
B_CELL_NAIVE_50 173.0
B_CELL_NAIVE_51 172.3
B_CELL_NAIVE_52 171.8
B_CELL_NAIVE_53 169.2
B_CELL_NAIVE_54 168.0
B_CELL_NAIVE_55 165.0
B_CELL_NAIVE_56 164.5
B_CELL_NAIVE_57 163.0
B_CELL_NAIVE_58 162.1
B_CELL_NAIVE_59 161.9
B_CELL_NAIVE_60 160.6
B_CELL_NAIVE_61 160.5
B_CELL_NAIVE_62 160.5
B_CELL_NAIVE_63 159.2
B_CELL_NAIVE_64 158.6
B_CELL_NAIVE_65 158.6
B_CELL_NAIVE_66 156.6
B_CELL_NAIVE_67 155.6
B_CELL_NAIVE_68 155.3
B_CELL_NAIVE_69 154.8
B_CELL_NAIVE_70 154.6
B_CELL_NAIVE_71 152.4
B_CELL_NAIVE_72 151.8
B_CELL_NAIVE_73 151.0
B_CELL_NAIVE_74 150.8
B_CELL_NAIVE_75 150.5
B_CELL_NAIVE_76 150.4
B_CELL_NAIVE_77 149.5
B_CELL_NAIVE_78 147.7
B_CELL_NAIVE_79 146.1
B_CELL_NAIVE_80 144.1
B_CELL_NAIVE_81 142.9
B_CELL_NAIVE_82 142.6
B_CELL_NAIVE_83 141.8
B_CELL_NAIVE_84 141.5
B_CELL_NAIVE_85 140.5
B_CELL_NAIVE_86 140.4
B_CELL_NAIVE_87 137.7
B_CELL_NAIVE_88 136.9
B_CELL_NAIVE_89 122.6
B_CELL_NAIVE_90 111.6
B_CELL_NAIVE_91 97.1
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