A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.8
nTPM
Monaco:
59.1
nTPM
Schmiedel:
109.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.8
HPA sample
nTPM
NK-cell nTPM: 6.8
Samples: 6
Max nTPM: 12.2
Min nTPM: 1.7
P10809_1013
12.2
P10809_1033
3.0
P10809_1052
6.0
P10809_1071
7.6
P10809_1093
1.7
P10809_1103
10.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.1
Monaco sample
nTPM
NK-cell nTPM: 59.1
Samples: 4
Max nTPM: 64.6
Min nTPM: 49.6
RHH5316_R3683
49.6
RHH5224_R3596
64.6
RHH5253_R3625
63.9
RHH5282_R3654
58.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.9
Schmiedel sample id
TPM
NK-cell TPM: 109.9
Samples: 90
Max TPM: 239.7
Min TPM: 70.6
NK_1
239.7
NK_2
215.2
NK_3
180.4
NK_4
165.7
NK_5
163.1
NK_6
153.7
NK_7
150.1
NK_8
146.1
NK_9
144.4
NK_10
144.2
NK_11
143.7
NK_12
133.9
NK_13
133.2
NK_14
129.8
NK_15
128.4
NK_16
127.7
NK_17
127.2
NK_18
127.0
NK_19
126.6
NK_20
124.7
NK_21
122.5
NK_22
121.9
NK_23
120.3
NK_24
119.1
NK_25
118.7
NK_26
118.5
NK_27
117.6
NK_28
116.9
NK_29
116.8
NK_30
111.5
NK_31
111.5
NK_32
111.3
NK_33
110.8
NK_34
110.8
NK_35
109.9
NK_36
109.3
NK_37
108.0
NK_38
108.0
NK_39
107.0
NK_40
105.7
NK_41
105.6
NK_42
105.3
NK_43
104.9
NK_44
103.3
NK_45
101.6
NK_46
101.5
NK_47
101.3
NK_48
101.1
NK_49
101.1
NK_50
100.4
NK_51
100.0
NK_52
99.7
NK_53
99.4
NK_54
99.0
NK_55
99.0
NK_56
98.4
NK_57
98.2
NK_58
96.4
NK_59
95.4
NK_60
95.4
NK_61
94.6
NK_62
93.7
NK_63
93.6
NK_64
93.4
NK_65
93.2
NK_66
93.0
NK_67
92.8
NK_68
91.9
NK_69
91.7
NK_70
90.8
NK_71
90.7
NK_72
89.1
NK_73
89.1
NK_74
88.4
NK_75
87.5
NK_76
87.1
NK_77
85.9
NK_78
85.7
NK_79
85.7
NK_80
84.6
NK_81
84.4
NK_82
84.2
NK_83
84.2
NK_84
83.5
NK_85
82.6
NK_86
81.9
NK_87
81.4
NK_88
79.3
NK_89
71.6
NK_90
70.6
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