A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.5
nTPM
Monaco:
173.8
nTPM
Schmiedel:
180.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.5
HPA sample
nTPM
Classical monocyte nTPM: 3.9
Samples: 6
Max nTPM: 5.0
Min nTPM: 3.0
P10809_1003
3.0
P10809_1020
3.2
P10809_1039
3.1
P10809_1058
4.3
P10809_1080
5.0
P10809_1107
4.6
Intermediate monocyte nTPM: 8.9
Samples: 6
Max nTPM: 12.6
Min nTPM: 6.5
P10809_1004
9.4
P10809_1023
6.5
P10809_1042
8.4
P10809_1061
8.8
P10809_1081
7.5
P10809_1108
12.6
Non-classical monocyte nTPM: 14.5
Samples: 5
Max nTPM: 17.4
Min nTPM: 12.5
P10809_1005
13.1
P10809_1053
12.5
P10809_1072
15.9
P10809_1082
17.4
P10809_1109
13.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
173.8
Monaco sample
nTPM
Classical monocyte nTPM: 103.1
Samples: 4
Max nTPM: 191.7
Min nTPM: 48.7
RHH5313_R3680
48.7
RHH5221_R3593
191.7
RHH5250_R3622
121.3
RHH5279_R3651
50.9
Intermediate monocyte nTPM: 166.4
Samples: 4
Max nTPM: 281.0
Min nTPM: 64.8
RHH5314_R3681
64.8
RHH5222_R3594
281.0
RHH5251_R3623
239.5
RHH5280_R3652
80.1
Non-classical monocyte nTPM: 173.8
Samples: 4
Max nTPM: 278.1
Min nTPM: 90.8
RHH5315_R3682
90.8
RHH5223_R3595
278.1
RHH5252_R3624
224.4
RHH5281_R3653
101.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
180.9
Schmiedel sample id
TPM
Classical monocyte TPM: 62.5
Samples: 91
Max TPM: 102.3
Min TPM: 44.3
MONOCYTES_1
102.3
MONOCYTES_2
91.8
MONOCYTES_3
88.6
MONOCYTES_4
86.9
MONOCYTES_5
86.8
MONOCYTES_6
85.4
MONOCYTES_7
80.4
MONOCYTES_8
80.0
MONOCYTES_9
77.6
MONOCYTES_10
77.5
MONOCYTES_11
77.2
MONOCYTES_12
76.2
MONOCYTES_13
75.3
MONOCYTES_14
74.7
MONOCYTES_15
73.1
MONOCYTES_16
71.9
MONOCYTES_17
70.7
MONOCYTES_18
70.5
MONOCYTES_19
70.3
MONOCYTES_20
70.2
MONOCYTES_21
69.9
MONOCYTES_22
69.7
MONOCYTES_23
69.6
MONOCYTES_24
69.3
MONOCYTES_25
69.2
MONOCYTES_26
68.3
MONOCYTES_27
68.1
MONOCYTES_28
67.2
MONOCYTES_29
66.6
MONOCYTES_30
65.0
MONOCYTES_31
64.5
MONOCYTES_32
63.9
MONOCYTES_33
63.8
MONOCYTES_34
63.8
MONOCYTES_35
63.7
MONOCYTES_36
63.4
MONOCYTES_37
62.8
MONOCYTES_38
62.8
MONOCYTES_39
62.6
MONOCYTES_40
62.1
MONOCYTES_41
62.0
MONOCYTES_42
61.2
MONOCYTES_43
60.8
MONOCYTES_44
60.7
MONOCYTES_45
60.7
MONOCYTES_46
59.6
MONOCYTES_47
59.2
MONOCYTES_48
59.2
MONOCYTES_49
59.0
MONOCYTES_50
59.0
MONOCYTES_51
58.3
MONOCYTES_52
58.3
MONOCYTES_53
58.1
MONOCYTES_54
58.0
MONOCYTES_55
57.7
MONOCYTES_56
56.5
MONOCYTES_57
56.5
MONOCYTES_58
56.4
MONOCYTES_59
56.3
MONOCYTES_60
56.2
MONOCYTES_61
56.1
MONOCYTES_62
55.9
MONOCYTES_63
55.5
MONOCYTES_64
55.4
MONOCYTES_65
55.3
MONOCYTES_66
55.3
MONOCYTES_67
54.8
MONOCYTES_68
54.8
MONOCYTES_69
54.5
MONOCYTES_70
54.1
MONOCYTES_71
53.8
MONOCYTES_72
53.7
MONOCYTES_73
53.7
MONOCYTES_74
53.5
MONOCYTES_75
53.5
MONOCYTES_76
53.2
MONOCYTES_77
53.0
MONOCYTES_78
52.1
MONOCYTES_79
52.0
MONOCYTES_80
51.8
MONOCYTES_81
51.2
MONOCYTES_82
50.8
MONOCYTES_83
50.7
MONOCYTES_84
50.3
MONOCYTES_85
49.5
MONOCYTES_86
48.5
MONOCYTES_87
46.7
MONOCYTES_88
45.5
MONOCYTES_89
44.8
MONOCYTES_90
44.3
MONOCYTES_91
44.3
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Non-classical monocyte TPM: 180.9
Samples: 90
Max TPM: 284.7
Min TPM: 73.0
M2_1
284.7
M2_2
267.0
M2_3
256.7
M2_4
250.9
M2_5
239.4
M2_6
237.0
M2_7
232.7
M2_8
231.5
M2_9
222.9
M2_10
222.5
M2_11
220.9
M2_12
220.3
M2_13
220.3
M2_14
211.2
M2_15
210.9
M2_16
210.2
M2_17
209.3
M2_18
209.3
M2_19
206.4
M2_20
203.7
M2_21
203.2
M2_22
203.2
M2_23
200.7
M2_24
198.8
M2_25
198.3
M2_26
198.0
M2_27
197.6
M2_28
197.6
M2_29
196.7
M2_30
195.5
M2_31
193.8
M2_32
192.9
M2_33
191.1
M2_34
189.3
M2_35
189.2
M2_36
188.2
M2_37
187.6
M2_38
186.3
M2_39
184.8
M2_40
183.7
M2_41
183.3
M2_42
180.6
M2_43
179.5
M2_44
179.3
M2_45
178.5
M2_46
178.4
M2_47
177.7
M2_48
176.2
M2_49
176.0
M2_50
175.6
M2_51
173.7
M2_52
172.4
M2_53
170.8
M2_54
169.4
M2_55
168.2
M2_56
167.4
M2_57
166.7
M2_58
166.5
M2_59
166.0
M2_60
165.7
M2_61
165.0
M2_62
164.8
M2_63
164.6
M2_64
164.3
M2_65
164.2
M2_66
163.4
M2_67
160.8
M2_68
160.1
M2_69
158.9
M2_70
157.5
M2_71
155.0
M2_72
154.5
M2_73
151.0
M2_74
148.4
M2_75
147.2
M2_76
145.2
M2_77
143.1
M2_78
142.2
M2_79
142.2
M2_80
139.9
M2_81
139.9
M2_82
138.8
M2_83
138.4
M2_84
138.2
M2_85
136.6
M2_86
132.1
M2_87
128.9
M2_88
125.9
M2_89
120.6
M2_90
73.0
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