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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPS10
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1031.3 nTPM
HPA Brain:294.1 nTPM
GTEx:1031.3 nTPM
FANTOM5:213.7 Scaled Tags Per Million
Mouse:474.6 nTPM
Rat:50.0 nTPM
Pig:398.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047268Antibody HPA048084
Glial cells MediumNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 65813
Sample Intensity
Hippocampal formation_01
69119
Hippocampal formation_02
83290
Hippocampal formation_03
23242
Hippocampal formation_04
62978
Hippocampal formation_05
61825
Hippocampal formation_06
68649

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.1
Sample id Sample description nTPM
Dentate gyrus
nTPM: 294.1
2530 Female, age 94, left hemisphere 366.5
2010 Male, age 76, both hemispheres 335.8
2531 Female, age 67, both hemispheres 286.1
2246 Female, age 85, both hemispheres 277.2
2528 Male, age 74, both hemispheres 249.9
1927 Female, age 91, both hemispheres 249.3
Entorhinal gyrus
nTPM: 276.9
2686 Male, age 75, right hemisphere 340.8
2117 Female, age 91, right hemisphere 291.0
1787 Male, age 76, left hemisphere 288.1
2764 Male, age 80, right hemisphere 271.6
1938 Female, age 85, left hemisphere 261.5
2613 Female, age 94, left hemisphere 208.4
Hippocampus, CA1
nTPM: 277.2
2749 Male, age 80, left hemisphere 308.2
2527 Male, age 74, both hemispheres 276.7
2082 Female, age 91, right hemisphere 275.4
2045 Male, age 76, both hemispheres 262.8
1873 Female, age 85, both hemispheres 262.7
Hippocampus, CA2
nTPM: 283.9
1963 Male, age 80, left hemisphere 348.0
2437 Female, age 94, left hemisphere 291.2
1892 Male, age 76, both hemispheres 291.0
1940 Female, age 85, left hemisphere 262.3
2113 Female, age 91, right hemisphere 256.9
2249 Male, age 74, both hemispheres 254.2
Hippocampus, CA3
nTPM: 259.9
1867 Male, age 76, both hemispheres 318.4
2861 Female, age 67, both hemispheres 278.4
1891 Female, age 85, both hemispheres 278.3
2137 Male, age 80, left hemisphere 270.6
2620 Female, age 94, left hemisphere 208.8
2436 Male, age 74, both hemispheres 205.1
Parahippocampal cortex
nTPM: 249.2
2018 Male, age 76, both hemispheres 346.7
2250 Female, age 67, right hemisphere 270.0
1850 Male, age 80, both hemispheres 254.3
1990 Female, age 91, right hemisphere 252.2
2532 Female, age 72, left hemisphere 248.4
2245 Female, age 91, both hemispheres 247.4
1933 Female, age 85, both hemispheres 245.2
2692 Male, age 74, both hemispheres 240.1
2622 Female, age 67, right hemisphere 213.3
2693 Female, age 94, both hemispheres 174.9
Perirhinal gyrus
nTPM: 266.9
1841 Female, age 85, right hemisphere 295.8
1847 Female, age 91, left hemisphere 282.1
1794 Male, age 80, right hemisphere 272.1
2848 Male, age 76, right hemisphere 246.7
2521 Female, age 94, right hemisphere 237.9
Subiculum
nTPM: 286.6
2438 Female, age 94, left hemisphere 318.0
2042 Male, age 76, both hemispheres 314.5
1977 Female, age 85, both hemispheres 311.1
1901 Male, age 80, both hemispheres 274.5
2729 Female, age 91, right hemisphere 257.2
2619 Male, age 74, both hemispheres 244.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1031.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1031.3
Samples: 255

Max nTPM: 2849.5
Min nTPM: 504.0
Std nTPM: 363.3
Median nTPM: 944.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 2849.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2617.1
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2365.5
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 2188.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2148.2
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2080.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1992.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1931.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1869.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1844.8
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1829.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1788.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1783.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1728.2
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 1721.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1714.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1691.5
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 1665.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1632.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1610.3
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1518.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1518.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1515.8
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 1486.0
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 1480.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1479.5
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 1470.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1452.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1448.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1424.8
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 1416.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1387.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1384.5
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 1381.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1342.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1332.5
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 1330.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1321.2
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 1308.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1308.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1298.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1289.0
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 1288.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1284.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1283.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 1283.1
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 1273.2
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1264.1
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 1261.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1258.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1256.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1256.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1234.6
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1234.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1225.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1225.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1224.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1223.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 1222.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1216.2
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 1213.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1204.9
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 1204.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1191.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1190.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1188.1
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 1184.7
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 1171.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1170.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1166.5
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 1163.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1160.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1158.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1156.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 1152.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1144.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1136.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1130.3
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 1126.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1108.0
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 1101.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1101.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1101.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1095.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1094.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1089.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1078.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1065.8
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 1065.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1064.9
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 1054.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 1054.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1048.4
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 1043.8
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 1043.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1035.1
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 1033.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1030.5
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 1029.4
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 1027.6
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 1025.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1025.3
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1024.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 1023.9
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 1021.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1018.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1014.6
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 1012.3
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 1011.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 999.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 989.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 989.3
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 983.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 978.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 975.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 969.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 967.8
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 966.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 962.3
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 961.9
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 959.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 958.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 956.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 956.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 953.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 947.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 946.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 944.6
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 944.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 944.1
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 941.4
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 938.2
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 936.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 932.7
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 929.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 927.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 927.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 923.7
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 921.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 921.5
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 920.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 915.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 915.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 913.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 912.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 910.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 910.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 903.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 896.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 892.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 890.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 883.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 879.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 879.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 878.8
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 876.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 866.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 866.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 864.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 863.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 861.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 861.4
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 857.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 857.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 856.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 855.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 854.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 851.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 850.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 846.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 843.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 841.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 841.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 838.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 832.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 831.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 827.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 825.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 821.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 821.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 819.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 817.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 815.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 809.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 807.2
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 806.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 801.1
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 800.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 795.8
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 794.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 793.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 790.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 790.8
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 786.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 780.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 773.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 773.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 772.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 770.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 769.7
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 769.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 764.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 763.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 762.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 761.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 759.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 742.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 741.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 741.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 738.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 738.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 733.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 731.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 726.6
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 723.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 721.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 720.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 718.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 707.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 703.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 702.2
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 690.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 689.3
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 674.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 673.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 668.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 667.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 667.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 667.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 664.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 661.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 657.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 655.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 652.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 644.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 639.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 633.4
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 632.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 631.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 625.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 623.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 621.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 617.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 600.9
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 597.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 591.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 584.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 582.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 582.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 572.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 570.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 564.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 526.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 508.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 504.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 213.7
FF:10169-103B7 60 years, female 213.9
FF:10153-102I9 76 years, female 213.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

398.9
Pig sample Sample description nTPM
Subiculum
nTPM: 320.8
Samples: 4

Max nTPM: 460.3
Min nTPM: 243.6
Sample A Female 460.3
Sample B Female 289.3
Sample C Male 243.6
Sample D Male 289.9
Dorsal hippocampus
nTPM: 398.9
Samples: 4

Max nTPM: 537.2
Min nTPM: 253.1
Sample A Female 537.2
Sample B Female 368.5
Sample C Male 436.7
Sample D Male 253.1
Entorhinal cortex
nTPM: 337.5
Samples: 4

Max nTPM: 410.5
Min nTPM: 230.7
Sample A Female 311.1
Sample B Female 397.7
Sample C Male 410.5
Sample D Male 230.7
Ventral hippocampus
nTPM: 348.5
Samples: 4

Max nTPM: 407.0
Min nTPM: 290.4
Sample A Female 369.3
Sample B Female 290.4
Sample C Male 407.0
Sample D Male 327.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

474.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 411.2
Samples: 4

Max nTPM: 443.8
Min nTPM: 386.4
Sample A 411.0
Sample B 403.6
Sample C 443.8
Sample D 386.4
Hippocampal formation
nTPM: 474.6
Samples: 4

Max nTPM: 570.8
Min nTPM: 424.3
Sample A 570.8
Sample B 425.2
Sample C 424.3
Sample D 478.2

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.0
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 46.1
Samples: 4

Max nTPM: 49.7
Min nTPM: 39.6
Sample A 47.7
Sample A 47.3
Sample A 49.7
Sample B 39.6
Ventral hippocampus
nTPM: 50.0
Samples: 4

Max nTPM: 58.3
Min nTPM: 41.3
Sample A 54.4
Sample A 41.3
Sample A 58.3
Sample A 45.8

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