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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPS10
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:336.0 nTPM
GTEx:1181.9 nTPM
FANTOM5:283.9 Scaled Tags Per Million
Pig:535.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.0
Sample id Sample description nTPM
Substantia nigra
nTPM: 336.0
1851 Male, age 51, unknown 406.9
2665 Male, age 74, both hemispheres 385.5
2241 Male, age 72, unknown 370.4
2409 Female, age 72, unknown 358.7
2699 Male, age 18, unknown 336.9
1916 Female, age 42, unknown 314.8
2590 Female, age 75, unknown 314.8
1889 Female, age 72, unknown 309.3
2583 Male, age 75, right hemisphere 282.5
1941 Male, age 53, unknown 279.8

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1181.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1181.9
Samples: 183

Max nTPM: 2875.0
Min nTPM: 467.7
Std nTPM: 440.1
Median nTPM: 1094.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2875.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2729.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2702.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2532.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2339.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2279.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2203.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2143.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2078.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2035.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1959.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1946.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1882.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1870.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1811.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1800.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1788.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1771.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1758.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1716.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1710.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1691.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1682.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1659.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1645.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1611.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1586.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1555.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1552.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1547.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1517.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1511.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1493.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1490.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1481.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1481.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1475.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1468.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1463.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1458.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1456.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1451.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1443.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1419.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1412.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1411.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1402.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1371.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1370.8
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1367.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1360.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1355.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1343.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1329.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1318.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1312.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1308.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1303.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1303.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1292.0
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1276.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1270.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1258.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1257.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1252.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1244.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1240.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1240.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1239.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1236.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1230.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1225.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1216.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1215.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1211.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1195.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1195.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1190.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1186.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1181.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1175.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1172.2
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1168.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1167.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1162.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1157.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1148.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1138.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1123.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1122.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1118.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1094.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1093.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1091.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1085.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1078.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1069.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1068.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1065.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1060.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1059.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1056.1
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1031.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1030.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1020.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1003.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1002.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 1001.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 999.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 992.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 992.4
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 971.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 970.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 968.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 960.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 952.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 950.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 949.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 947.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 945.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 943.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 926.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 920.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 906.4
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 900.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 900.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 899.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 892.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 890.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 889.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 884.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 877.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 876.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 874.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 867.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 864.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 860.1
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 854.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 854.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 845.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 840.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 838.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 834.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 826.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 824.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 822.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 821.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 821.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 816.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 814.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 812.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 811.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 810.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 804.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 803.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 802.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 798.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 797.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 792.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 791.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 761.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 730.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 729.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 725.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 723.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 714.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 713.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 699.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 697.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 696.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 673.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 671.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 660.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 655.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 654.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 609.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 598.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 584.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 544.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 538.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 529.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 528.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 467.7
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

283.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.9
FF:10158-103A5 76 years, female 283.9

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

535.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 535.1
Samples: 3

Max nTPM: 684.6
Min nTPM: 412.0
Sample A Female 684.6
Sample B Female 508.7
Sample C Male 412.0

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