A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2839.3
nTPM
Monaco:
767.4
nTPM
Schmiedel:
45.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2839.3
HPA sample
nTPM
Memory B-cell nTPM: 2839.3
Samples: 6
Max nTPM: 3929.3
Min nTPM: 2100.9
P10809_1017
2507.3
P10809_1025
2474.7
P10809_1044
3929.3
P10809_1063
3326.1
P10809_1092
2100.9
P10809_1105
2697.2
Naive B-cell nTPM: 2749.2
Samples: 6
Max nTPM: 4044.1
Min nTPM: 1850.2
P10809_1011
2646.0
P10809_1029
2192.1
P10809_1048
4044.1
P10809_1067
3205.5
P10809_1091
1850.2
P10809_1104
2557.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
767.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 767.4
Samples: 4
Max nTPM: 1254.9
Min nTPM: 167.7
RHH5310_R3677
641.8
RHH5218_R3590
167.7
RHH5247_R3619
1254.9
RHH5276_R3648
1005.3
Naive B-cell nTPM: 708.1
Samples: 4
Max nTPM: 1179.7
Min nTPM: 217.0
RHH5308_R3675
824.9
RHH5216_R3588
217.0
RHH5245_R3617
1179.7
RHH5274_R3646
610.8
Non-switched memory B-cell nTPM: 534.0
Samples: 4
Max nTPM: 865.7
Min nTPM: 204.9
RHH5309_R3676
782.5
RHH5217_R3589
204.9
RHH5246_R3618
282.7
RHH5275_R3647
865.7
Plasmablast nTPM: 488.6
Samples: 4
Max nTPM: 601.1
Min nTPM: 257.5
RHH5312_R3679
601.1
RHH5220_R3592
257.5
RHH5249_R3621
508.4
RHH5278_R3650
587.2
Switched memory B-cell nTPM: 564.9
Samples: 4
Max nTPM: 806.4
Min nTPM: 303.8
RHH5311_R3678
806.4
RHH5219_R3591
303.8
RHH5248_R3620
356.7
RHH5277_R3649
792.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.6
Schmiedel sample id
TPM
Naive B-cell TPM: 45.7
Samples: 91
Max TPM: 160.7
Min TPM: 22.5
B_CELL_NAIVE_1
160.7
B_CELL_NAIVE_2
143.9
B_CELL_NAIVE_3
98.8
B_CELL_NAIVE_4
96.8
B_CELL_NAIVE_5
94.9
B_CELL_NAIVE_6
81.6
B_CELL_NAIVE_7
55.2
B_CELL_NAIVE_8
54.2
B_CELL_NAIVE_9
52.7
B_CELL_NAIVE_10
51.5
B_CELL_NAIVE_11
51.4
B_CELL_NAIVE_12
51.0
B_CELL_NAIVE_13
50.2
B_CELL_NAIVE_14
50.1
B_CELL_NAIVE_15
50.0
B_CELL_NAIVE_16
49.6
B_CELL_NAIVE_17
49.6
B_CELL_NAIVE_18
49.5
B_CELL_NAIVE_19
49.0
B_CELL_NAIVE_20
48.9
B_CELL_NAIVE_21
48.8
B_CELL_NAIVE_22
48.4
B_CELL_NAIVE_23
48.4
B_CELL_NAIVE_24
47.2
B_CELL_NAIVE_25
47.2
B_CELL_NAIVE_26
46.2
B_CELL_NAIVE_27
46.2
B_CELL_NAIVE_28
46.0
B_CELL_NAIVE_29
45.9
B_CELL_NAIVE_30
45.8
B_CELL_NAIVE_31
45.6
B_CELL_NAIVE_32
45.6
B_CELL_NAIVE_33
45.1
B_CELL_NAIVE_34
45.1
B_CELL_NAIVE_35
44.8
B_CELL_NAIVE_36
44.2
B_CELL_NAIVE_37
43.8
B_CELL_NAIVE_38
43.8
B_CELL_NAIVE_39
43.5
B_CELL_NAIVE_40
43.5
B_CELL_NAIVE_41
42.9
B_CELL_NAIVE_42
42.1
B_CELL_NAIVE_43
41.4
B_CELL_NAIVE_44
41.3
B_CELL_NAIVE_45
41.2
B_CELL_NAIVE_46
41.1
B_CELL_NAIVE_47
40.8
B_CELL_NAIVE_48
40.3
B_CELL_NAIVE_49
40.2
B_CELL_NAIVE_50
40.2
B_CELL_NAIVE_51
40.0
B_CELL_NAIVE_52
39.9
B_CELL_NAIVE_53
39.8
B_CELL_NAIVE_54
39.6
B_CELL_NAIVE_55
39.3
B_CELL_NAIVE_56
39.2
B_CELL_NAIVE_57
38.9
B_CELL_NAIVE_58
38.8
B_CELL_NAIVE_59
38.6
B_CELL_NAIVE_60
38.6
B_CELL_NAIVE_61
38.4
B_CELL_NAIVE_62
38.4
B_CELL_NAIVE_63
37.7
B_CELL_NAIVE_64
37.6
B_CELL_NAIVE_65
37.5
B_CELL_NAIVE_66
37.5
B_CELL_NAIVE_67
37.2
B_CELL_NAIVE_68
36.9
B_CELL_NAIVE_69
36.9
B_CELL_NAIVE_70
36.9
B_CELL_NAIVE_71
36.3
B_CELL_NAIVE_72
36.3
B_CELL_NAIVE_73
35.8
B_CELL_NAIVE_74
35.7
B_CELL_NAIVE_75
35.5
B_CELL_NAIVE_76
34.7
B_CELL_NAIVE_77
33.7
B_CELL_NAIVE_78
33.7
B_CELL_NAIVE_79
33.7
B_CELL_NAIVE_80
33.3
B_CELL_NAIVE_81
33.1
B_CELL_NAIVE_82
33.1
B_CELL_NAIVE_83
31.9
B_CELL_NAIVE_84
31.2
B_CELL_NAIVE_85
30.4
B_CELL_NAIVE_86
30.0
B_CELL_NAIVE_87
29.6
B_CELL_NAIVE_88
28.5
B_CELL_NAIVE_89
25.9
B_CELL_NAIVE_90
25.6
B_CELL_NAIVE_91
22.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
