A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1681.3
nTPM
Monaco:
247.4
nTPM
Schmiedel:
72.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1681.3
HPA sample
nTPM
NK-cell nTPM: 1681.3
Samples: 6
Max nTPM: 2400.1
Min nTPM: 720.6
P10809_1013
1615.3
P10809_1033
1434.6
P10809_1052
2387.6
P10809_1071
2400.1
P10809_1093
720.6
P10809_1103
1529.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
247.4
Monaco sample
nTPM
NK-cell nTPM: 247.4
Samples: 4
Max nTPM: 304.0
Min nTPM: 138.9
RHH5316_R3683
304.0
RHH5224_R3596
138.9
RHH5253_R3625
282.1
RHH5282_R3654
264.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.1
Schmiedel sample id
TPM
NK-cell TPM: 72.1
Samples: 90
Max TPM: 153.1
Min TPM: 18.3
NK_1
153.1
NK_2
126.3
NK_3
125.8
NK_4
119.2
NK_5
112.5
NK_6
110.8
NK_7
109.8
NK_8
105.6
NK_9
98.7
NK_10
98.5
NK_11
97.7
NK_12
97.4
NK_13
95.8
NK_14
94.6
NK_15
94.4
NK_16
94.0
NK_17
93.0
NK_18
92.4
NK_19
92.3
NK_20
92.2
NK_21
92.0
NK_22
91.3
NK_23
89.5
NK_24
86.8
NK_25
86.6
NK_26
86.2
NK_27
85.6
NK_28
85.2
NK_29
80.4
NK_30
80.2
NK_31
79.5
NK_32
79.4
NK_33
77.9
NK_34
76.7
NK_35
76.6
NK_36
75.9
NK_37
75.1
NK_38
74.9
NK_39
74.6
NK_40
73.0
NK_41
72.6
NK_42
72.2
NK_43
71.6
NK_44
70.9
NK_45
70.6
NK_46
69.6
NK_47
68.9
NK_48
67.4
NK_49
67.2
NK_50
66.7
NK_51
66.6
NK_52
66.1
NK_53
66.1
NK_54
65.6
NK_55
64.9
NK_56
64.8
NK_57
64.7
NK_58
60.9
NK_59
60.8
NK_60
60.5
NK_61
60.3
NK_62
60.3
NK_63
59.8
NK_64
58.4
NK_65
57.9
NK_66
56.8
NK_67
56.7
NK_68
56.1
NK_69
54.2
NK_70
53.7
NK_71
53.2
NK_72
52.9
NK_73
51.7
NK_74
49.7
NK_75
49.4
NK_76
49.1
NK_77
49.1
NK_78
45.5
NK_79
45.4
NK_80
45.2
NK_81
45.2
NK_82
44.4
NK_83
43.6
NK_84
41.5
NK_85
38.4
NK_86
37.9
NK_87
36.9
NK_88
25.6
NK_89
24.7
NK_90
18.3
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