A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1247.2
nTPM
Monaco:
374.6
nTPM
Schmiedel:
53.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1247.2
HPA sample
nTPM
Classical monocyte nTPM: 1247.3
Samples: 6
Max nTPM: 2302.1
Min nTPM: 677.9
P10809_1003
2302.1
P10809_1020
823.2
P10809_1039
1393.3
P10809_1058
1245.4
P10809_1080
677.9
P10809_1107
1041.6
Intermediate monocyte nTPM: 999.7
Samples: 6
Max nTPM: 1378.0
Min nTPM: 694.8
P10809_1004
848.8
P10809_1023
1042.0
P10809_1042
1337.4
P10809_1061
697.2
P10809_1081
694.8
P10809_1108
1378.0
Non-classical monocyte nTPM: 968.6
Samples: 5
Max nTPM: 1139.7
Min nTPM: 615.4
P10809_1005
1064.1
P10809_1053
1139.7
P10809_1072
905.1
P10809_1082
615.4
P10809_1109
1118.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
374.6
Monaco sample
nTPM
Classical monocyte nTPM: 257.3
Samples: 4
Max nTPM: 323.3
Min nTPM: 125.8
RHH5313_R3680
323.3
RHH5221_R3593
125.8
RHH5250_R3622
260.3
RHH5279_R3651
319.7
Intermediate monocyte nTPM: 374.6
Samples: 4
Max nTPM: 434.8
Min nTPM: 314.1
RHH5314_R3681
434.8
RHH5222_R3594
329.8
RHH5251_R3623
419.7
RHH5280_R3652
314.1
Non-classical monocyte nTPM: 260.7
Samples: 4
Max nTPM: 357.1
Min nTPM: 171.1
RHH5315_R3682
357.1
RHH5223_R3595
171.1
RHH5252_R3624
334.0
RHH5281_R3653
180.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.0
Schmiedel sample id
TPM
Classical monocyte TPM: 53.0
Samples: 91
Max TPM: 75.1
Min TPM: 31.3
MONOCYTES_1
75.1
MONOCYTES_2
74.3
MONOCYTES_3
71.5
MONOCYTES_4
70.8
MONOCYTES_5
70.1
MONOCYTES_6
69.3
MONOCYTES_7
69.2
MONOCYTES_8
68.8
MONOCYTES_9
65.3
MONOCYTES_10
63.8
MONOCYTES_11
63.6
MONOCYTES_12
63.5
MONOCYTES_13
63.4
MONOCYTES_14
63.2
MONOCYTES_15
62.1
MONOCYTES_16
61.0
MONOCYTES_17
60.4
MONOCYTES_18
60.3
MONOCYTES_19
60.2
MONOCYTES_20
59.9
MONOCYTES_21
59.8
MONOCYTES_22
59.8
MONOCYTES_23
59.7
MONOCYTES_24
59.2
MONOCYTES_25
59.1
MONOCYTES_26
58.9
MONOCYTES_27
58.6
MONOCYTES_28
58.5
MONOCYTES_29
58.2
MONOCYTES_30
58.0
MONOCYTES_31
57.9
MONOCYTES_32
57.9
MONOCYTES_33
57.3
MONOCYTES_34
57.1
MONOCYTES_35
56.4
MONOCYTES_36
56.1
MONOCYTES_37
56.0
MONOCYTES_38
55.4
MONOCYTES_39
54.9
MONOCYTES_40
54.7
MONOCYTES_41
53.9
MONOCYTES_42
53.8
MONOCYTES_43
53.6
MONOCYTES_44
53.5
MONOCYTES_45
53.2
MONOCYTES_46
52.9
MONOCYTES_47
52.7
MONOCYTES_48
52.0
MONOCYTES_49
51.8
MONOCYTES_50
51.7
MONOCYTES_51
51.6
MONOCYTES_52
51.3
MONOCYTES_53
51.2
MONOCYTES_54
50.8
MONOCYTES_55
50.8
MONOCYTES_56
50.7
MONOCYTES_57
50.5
MONOCYTES_58
49.6
MONOCYTES_59
49.5
MONOCYTES_60
49.5
MONOCYTES_61
49.5
MONOCYTES_62
48.8
MONOCYTES_63
48.7
MONOCYTES_64
48.6
MONOCYTES_65
48.6
MONOCYTES_66
48.3
MONOCYTES_67
47.6
MONOCYTES_68
47.2
MONOCYTES_69
46.8
MONOCYTES_70
46.7
MONOCYTES_71
46.4
MONOCYTES_72
45.7
MONOCYTES_73
45.2
MONOCYTES_74
45.2
MONOCYTES_75
44.7
MONOCYTES_76
44.3
MONOCYTES_77
43.5
MONOCYTES_78
43.4
MONOCYTES_79
43.4
MONOCYTES_80
41.8
MONOCYTES_81
40.3
MONOCYTES_82
39.8
MONOCYTES_83
37.1
MONOCYTES_84
36.9
MONOCYTES_85
36.7
MONOCYTES_86
36.4
MONOCYTES_87
36.1
MONOCYTES_88
35.6
MONOCYTES_89
34.6
MONOCYTES_90
31.8
MONOCYTES_91
31.3
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Non-classical monocyte TPM: 16.5
Samples: 90
Max TPM: 82.8
Min TPM: 7.9
M2_1
82.8
M2_2
25.3
M2_3
24.7
M2_4
22.4
M2_5
21.3
M2_6
20.6
M2_7
20.6
M2_8
20.5
M2_9
19.8
M2_10
19.7
M2_11
19.6
M2_12
19.6
M2_13
19.4
M2_14
19.4
M2_15
19.2
M2_16
18.9
M2_17
18.9
M2_18
18.9
M2_19
18.8
M2_20
18.5
M2_21
18.3
M2_22
18.2
M2_23
18.0
M2_24
18.0
M2_25
18.0
M2_26
17.7
M2_27
17.7
M2_28
17.7
M2_29
17.2
M2_30
17.1
M2_31
17.1
M2_32
17.0
M2_33
17.0
M2_34
16.9
M2_35
16.8
M2_36
16.7
M2_37
16.7
M2_38
16.6
M2_39
16.5
M2_40
16.4
M2_41
16.3
M2_42
16.1
M2_43
16.1
M2_44
16.0
M2_45
15.8
M2_46
15.7
M2_47
15.5
M2_48
15.5
M2_49
15.5
M2_50
15.5
M2_51
15.4
M2_52
15.2
M2_53
15.1
M2_54
15.1
M2_55
15.0
M2_56
15.0
M2_57
14.7
M2_58
14.7
M2_59
14.6
M2_60
14.5
M2_61
14.5
M2_62
14.4
M2_63
14.2
M2_64
14.2
M2_65
14.1
M2_66
14.1
M2_67
14.0
M2_68
13.8
M2_69
13.6
M2_70
13.3
M2_71
13.1
M2_72
13.1
M2_73
13.1
M2_74
13.0
M2_75
12.9
M2_76
12.3
M2_77
12.2
M2_78
12.2
M2_79
12.1
M2_80
11.8
M2_81
11.5
M2_82
11.4
M2_83
11.2
M2_84
11.0
M2_85
10.6
M2_86
10.5
M2_87
9.0
M2_88
8.5
M2_89
8.2
M2_90
7.9
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