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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:27.2 nTPM
HPA Brain:162.0 nTPM
GTEx:27.2 nTPM
FANTOM5:253.3 Scaled Tags Per Million
Pig:219.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 162.0
2048 Male, age 55, midline 262.8
1981 Female, age 72, midline 161.3
2816 Male, age 47, midline 142.5
2565 Male, age 75, midline 138.6
2194 Female, age 79, both hemispheres 104.9
Cervical spinal cord, dorsal horn
nTPM: 113.8
2173 Female, age 72, unknown 147.6
2069 Male, age 47, both hemispheres 124.3
1877 Male, age 55, unknown 120.8
2721 Male, age 90, both hemispheres 119.8
2296 Male, age 66, both hemispheres 115.3
2297 Male, age 75, both hemispheres 55.2
Cervical spinal cord, ventral horn
nTPM: 141.7
2098 Female, age 72, unknown 261.3
2809 Male, age 90, both hemispheres 195.0
2295 Male, age 66, both hemispheres 145.3
2480 Male, age 75, both hemispheres 98.1
2068 Male, age 55, unknown 91.2
2820 Female, age 79, both hemispheres 59.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 27.2
Samples: 159

Max nTPM: 116.4
Min nTPM: 8.5
Std nTPM: 14.2
Median nTPM: 24.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 91.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 64.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 63.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 50.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 48.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 48.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 47.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 46.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 45.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 45.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 45.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 44.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 43.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 43.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 43.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 42.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 42.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 41.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 41.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 40.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 39.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 39.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 39.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 38.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 38.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 38.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 37.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 37.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 37.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 37.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 35.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 34.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 34.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 34.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 33.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 33.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 33.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 33.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 33.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 33.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 33.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 33.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 32.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 32.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 31.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 31.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 31.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 30.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 30.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 30.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 30.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 29.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 29.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 29.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 29.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 28.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 28.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 28.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 28.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 28.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 28.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 28.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 27.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 27.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 27.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 27.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 26.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 26.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 26.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 26.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 26.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 25.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 25.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 25.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 24.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 24.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 24.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 23.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 23.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 23.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 23.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 23.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 22.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 22.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 22.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 22.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 22.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 22.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 22.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 21.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 21.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 21.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 21.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 21.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 21.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 21.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 20.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 20.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 20.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 20.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 20.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 20.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 19.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 19.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 19.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 19.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 19.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 19.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 18.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 18.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 18.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 18.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 18.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 18.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 18.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 17.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 17.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 16.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 16.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 16.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 16.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 16.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 16.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 15.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 15.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 15.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 15.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 15.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 15.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 14.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 14.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 14.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 14.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 14.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 14.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 13.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 13.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 13.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 12.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 12.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 12.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 12.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 12.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 11.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 11.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 11.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 11.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 10.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 10.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 10.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 10.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 9.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 8.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

253.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 253.3
FF:10181-103D1 60 years, female 281.4
FF:10159-103A6 76 years, female 225.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 219.1
Samples: 4

Max nTPM: 506.1
Min nTPM: 50.2
Sample A Female 50.2
Sample B Female 182.0
Sample C Male 506.1
Sample D Male 137.9
Ventral spinal cord
nTPM: 95.3
Samples: 4

Max nTPM: 202.6
Min nTPM: 51.4
Sample A Female 51.4
Sample B Female 59.2
Sample C Male 202.6
Sample D Male 67.9

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