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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:132.6 nTPM
HPA:67.7 nTPM
GTEx:132.6 nTPM
FANTOM5:532.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019010Antibody HPA019070Antibody HPA026643
Glandular cells Not detectedMediumHigh






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.7
overview
Male, age 65
Small intestine sample 232
nTPM: 68.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 73.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 64.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 64.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 132.6
Samples: 187

Max nTPM: 402.1
Min nTPM: 40.2
Std nTPM: 63.6
Median nTPM: 120.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 402.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 329.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 320.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 316.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 305.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 293.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 290.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 273.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 267.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 267.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 266.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 250.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 249.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 249.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 237.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 233.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 232.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 231.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 226.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 220.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 215.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 208.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 207.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 207.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 206.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 205.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 193.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 192.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 191.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 189.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 183.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 183.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 181.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 178.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 177.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 176.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 176.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 174.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 169.8
GTEX-1192X-2526-SM-59868 50-59 years, male 168.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 164.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 163.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 163.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 163.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 161.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 159.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 158.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 158.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 158.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 157.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 156.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 156.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 156.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 156.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 156.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 155.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 151.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 148.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 147.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 147.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 147.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 146.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 143.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 142.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 140.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 140.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 140.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 138.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 137.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 137.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 137.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 136.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 135.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 135.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 135.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 135.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 135.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 133.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 133.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 132.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 132.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 131.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 126.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 126.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 126.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 124.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 123.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 122.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 122.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 122.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 120.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 120.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 120.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 120.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 119.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 119.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 114.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 114.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 113.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 112.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 112.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 111.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 110.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 109.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 107.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 107.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 105.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 105.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 104.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 104.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 103.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 103.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 103.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 101.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 100.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 99.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 99.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 97.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 96.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 96.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 96.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 96.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 96.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 94.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 94.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 93.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 93.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 91.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 91.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 91.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 90.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 90.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 89.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 89.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 89.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 89.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 88.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 88.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 87.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 87.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 84.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 84.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 84.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 83.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 83.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 82.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 82.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 81.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 81.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 80.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 80.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 80.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 79.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 79.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 79.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 77.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 75.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 74.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 74.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 74.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 73.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 73.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 73.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 72.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 72.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 72.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 71.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 71.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 69.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 69.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 68.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 66.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 66.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 65.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 64.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 63.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 62.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 60.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 59.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 54.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 53.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 53.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 52.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 50.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 49.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 44.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 40.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

532.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 532.2
FF:10024-101D6 15,40,85 years, mixed 532.2

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