MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.8 nTPM
HPA Brain:61.6 nTPM
GTEx:71.8 nTPM
FANTOM5:45.8 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:19.5 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.8
2586 Male, age 75, left hemisphere 68.7
2411 Female, age 72, unknown 64.9
2019 Male, age 18, unknown 60.7
2828 Female, age 72, unknown 59.1
1827 Male, age 72, unknown 55.5
1870 Female, age 42, unknown 55.4
1833 Male, age 53, unknown 50.3
2219 Male, age 76, both hemispheres 48.4
1830 Male, age 51, unknown 48.1
2666 Male, age 74, left hemisphere 46.9
Dorsal raphe nucleus
nTPM: 61.6
2298 Female, age 72, unknown 78.1
2047 Male, age 72, unknown 61.5
2750 Male, age 76, both hemispheres 58.2
2016 Female, age 72, unknown 56.3
1828 Male, age 53, unknown 54.1
Inferior colliculus
nTPM: 47.1
2097 Female, age 72, unknown 56.9
1890 Male, age 53, unknown 50.6
1848 Female, age 42, unknown 41.5
2849 Male, age 72, unknown 39.4
Median raphe nucleus
nTPM: 48.2
2220 Male, age 76, midline 48.2
Periaquaductal grey, anterior
nTPM: 56.6
2502 Female, age 75, unknown 59.6
1795 Male, age 51, unknown 56.6
1947 Male, age 18, unknown 53.6
Periaquaductal grey, dorsal
nTPM: 47.6
1840 Male, age 53, unknown 54.3
2464 Female, age 72, unknown 49.6
1831 Male, age 72, unknown 47.4
2850 Male, age 76, both hemispheres 39.1
Periaquaductal grey, lateral
nTPM: 46.4
2272 Male, age 74, both hemispheres 49.5
2053 Male, age 18, unknown 49.4
2140 Male, age 76, both hemispheres 40.2
Pretectal area
nTPM: 52.9
2007 Male, age 72, unknown 64.8
2273 Male, age 74, both hemispheres 58.2
1816 Male, age 51, unknown 56.1
1817 Female, age 42, unknown 54.4
1944 Female, age 72, unknown 52.8
2316 Male, age 76, right hemisphere 52.5
2224 Female, age 72, unknown 52.0
1815 Male, age 53, unknown 51.4
2667 Female, age 75, unknown 50.2
2825 Male, age 18, unknown 46.4
2407 Male, age 75, both hemispheres 42.7
Red nucleus
nTPM: 55.2
1821 Female, age 72, unknown 62.4
2503 Female, age 72, unknown 61.3
2769 Male, age 72, unknown 58.7
1904 Male, age 53, unknown 58.0
2227 Male, age 72, unknown 57.0
2785 Male, age 18, unknown 56.2
2725 Female, age 75, unknown 55.0
2588 Male, age 74, left hemisphere 54.0
1865 Male, age 51, unknown 53.5
2584 Male, age 75, left hemisphere 49.6
2823 Male, age 76, right hemisphere 48.6
1954 Female, age 42, unknown 48.3
Substantia nigra
nTPM: 56.4
1916 Female, age 42, unknown 74.0
1851 Male, age 51, unknown 68.6
1889 Female, age 72, unknown 59.5
2590 Female, age 75, unknown 55.1
2665 Male, age 74, both hemispheres 54.6
1941 Male, age 53, unknown 54.5
2699 Male, age 18, unknown 53.6
2583 Male, age 75, right hemisphere 51.6
2409 Female, age 72, unknown 47.6
2241 Male, age 72, unknown 45.0
Superior colliculus
nTPM: 51.2
2664 Male, age 75, both hemispheres 60.7
2587 Male, age 74, left hemisphere 55.3
1995 Male, age 72, unknown 54.2
2261 Male, age 18, unknown 53.1
1796 Male, age 53, unknown 52.4
2668 Female, age 75, unknown 51.3
1913 Female, age 42, unknown 48.8
2087 Female, age 72, unknown 48.0
1839 Male, age 51, unknown 46.2
1895 Male, age 76, right hemisphere 42.1
Ventral tegmental area
nTPM: 59.4
1915 Female, age 42, unknown 70.0
2410 Female, age 72, unknown 67.8
1942 Male, age 51, unknown 58.6
2021 Male, age 53, unknown 56.9
2218 Male, age 76, both hemispheres 52.3
2223 Female, age 72, unknown 50.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.8
Samples: 183

Max nTPM: 137.3
Min nTPM: 37.0
Std nTPM: 18.0
Median nTPM: 68.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 137.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 134.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 133.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 122.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 113.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 109.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 105.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 103.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 101.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.8
FF:10158-103A5 76 years, female 45.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.6
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.2
Sample A Female 7.4
Sample B Female 6.2
Sample C Male 6.2
Sample D Male 6.4
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.8
Sample A Female 8.9
Sample B Female 6.8
Sample C Male 6.6
Sample D Male 5.8
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.3
Min nTPM: 6.1
Sample B Female 6.1
Sample C Male 6.6
Sample D Male 7.3
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.3
Sample A Female 7.2
Sample B Female 8.5
Sample C Male 6.5
Sample D Male 6.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 22.6
Min nTPM: 17.2
Sample A Male 22.6
Sample B Male 18.9
Sample C Female 17.2
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68441580 Antisense, RP_041214_02_F04, Mouse strain C57BL/6J (56 days, male) 0.2

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