A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2383.5
nTPM
Monaco:
649.0
nTPM
Schmiedel:
430.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2383.5
HPA sample
nTPM
Memory B-cell nTPM: 2383.5
Samples: 6
Max nTPM: 2910.1
Min nTPM: 2025.5
P10809_1017
2910.1
P10809_1025
2312.9
P10809_1044
2146.3
P10809_1063
2421.3
P10809_1092
2025.5
P10809_1105
2484.8
Naive B-cell nTPM: 2169.1
Samples: 6
Max nTPM: 2413.3
Min nTPM: 1868.6
P10809_1011
2413.3
P10809_1029
1868.6
P10809_1048
2223.6
P10809_1067
2229.5
P10809_1091
1899.2
P10809_1104
2380.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
649.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 649.0
Samples: 4
Max nTPM: 1082.6
Min nTPM: 152.7
RHH5310_R3677
506.1
RHH5218_R3590
152.7
RHH5247_R3619
1082.6
RHH5276_R3648
854.5
Naive B-cell nTPM: 632.6
Samples: 4
Max nTPM: 1179.9
Min nTPM: 269.6
RHH5308_R3675
576.1
RHH5216_R3588
269.6
RHH5245_R3617
1179.9
RHH5274_R3646
504.6
Non-switched memory B-cell nTPM: 483.9
Samples: 4
Max nTPM: 933.4
Min nTPM: 186.7
RHH5309_R3676
579.8
RHH5217_R3589
235.6
RHH5246_R3618
186.7
RHH5275_R3647
933.4
Plasmablast nTPM: 430.0
Samples: 4
Max nTPM: 568.5
Min nTPM: 275.0
RHH5312_R3679
482.2
RHH5220_R3592
275.0
RHH5249_R3621
394.4
RHH5278_R3650
568.5
Switched memory B-cell nTPM: 408.8
Samples: 4
Max nTPM: 611.9
Min nTPM: 257.0
RHH5311_R3678
447.9
RHH5219_R3591
318.3
RHH5248_R3620
257.0
RHH5277_R3649
611.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
430.3
Schmiedel sample id
TPM
Naive B-cell TPM: 430.3
Samples: 91
Max TPM: 536.8
Min TPM: 312.2
B_CELL_NAIVE_1
536.8
B_CELL_NAIVE_2
517.1
B_CELL_NAIVE_3
502.2
B_CELL_NAIVE_4
499.8
B_CELL_NAIVE_5
499.6
B_CELL_NAIVE_6
494.8
B_CELL_NAIVE_7
489.9
B_CELL_NAIVE_8
482.5
B_CELL_NAIVE_9
482.0
B_CELL_NAIVE_10
481.9
B_CELL_NAIVE_11
480.7
B_CELL_NAIVE_12
477.3
B_CELL_NAIVE_13
476.1
B_CELL_NAIVE_14
472.9
B_CELL_NAIVE_15
472.0
B_CELL_NAIVE_16
469.6
B_CELL_NAIVE_17
467.4
B_CELL_NAIVE_18
466.3
B_CELL_NAIVE_19
462.3
B_CELL_NAIVE_20
461.4
B_CELL_NAIVE_21
460.7
B_CELL_NAIVE_22
460.3
B_CELL_NAIVE_23
458.6
B_CELL_NAIVE_24
455.6
B_CELL_NAIVE_25
455.2
B_CELL_NAIVE_26
454.9
B_CELL_NAIVE_27
452.9
B_CELL_NAIVE_28
452.4
B_CELL_NAIVE_29
449.0
B_CELL_NAIVE_30
448.9
B_CELL_NAIVE_31
448.4
B_CELL_NAIVE_32
448.1
B_CELL_NAIVE_33
446.7
B_CELL_NAIVE_34
442.5
B_CELL_NAIVE_35
441.7
B_CELL_NAIVE_36
440.2
B_CELL_NAIVE_37
439.7
B_CELL_NAIVE_38
439.7
B_CELL_NAIVE_39
438.5
B_CELL_NAIVE_40
436.3
B_CELL_NAIVE_41
436.2
B_CELL_NAIVE_42
435.0
B_CELL_NAIVE_43
434.7
B_CELL_NAIVE_44
434.0
B_CELL_NAIVE_45
433.2
B_CELL_NAIVE_46
431.7
B_CELL_NAIVE_47
431.2
B_CELL_NAIVE_48
428.0
B_CELL_NAIVE_49
427.6
B_CELL_NAIVE_50
423.0
B_CELL_NAIVE_51
420.8
B_CELL_NAIVE_52
420.1
B_CELL_NAIVE_53
419.9
B_CELL_NAIVE_54
419.6
B_CELL_NAIVE_55
419.4
B_CELL_NAIVE_56
419.1
B_CELL_NAIVE_57
417.3
B_CELL_NAIVE_58
417.0
B_CELL_NAIVE_59
415.8
B_CELL_NAIVE_60
415.7
B_CELL_NAIVE_61
415.3
B_CELL_NAIVE_62
414.3
B_CELL_NAIVE_63
413.3
B_CELL_NAIVE_64
412.5
B_CELL_NAIVE_65
409.9
B_CELL_NAIVE_66
409.7
B_CELL_NAIVE_67
407.5
B_CELL_NAIVE_68
407.4
B_CELL_NAIVE_69
405.9
B_CELL_NAIVE_70
402.1
B_CELL_NAIVE_71
402.0
B_CELL_NAIVE_72
401.4
B_CELL_NAIVE_73
399.5
B_CELL_NAIVE_74
392.9
B_CELL_NAIVE_75
391.5
B_CELL_NAIVE_76
390.6
B_CELL_NAIVE_77
386.8
B_CELL_NAIVE_78
385.1
B_CELL_NAIVE_79
384.9
B_CELL_NAIVE_80
384.4
B_CELL_NAIVE_81
381.2
B_CELL_NAIVE_82
380.5
B_CELL_NAIVE_83
375.9
B_CELL_NAIVE_84
374.9
B_CELL_NAIVE_85
370.3
B_CELL_NAIVE_86
367.3
B_CELL_NAIVE_87
364.8
B_CELL_NAIVE_88
362.4
B_CELL_NAIVE_89
360.6
B_CELL_NAIVE_90
330.3
B_CELL_NAIVE_91
312.2
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