A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1544.0
nTPM
Monaco:
503.4
nTPM
Schmiedel:
321.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1544.0
HPA sample
nTPM
Classical monocyte nTPM: 1544.0
Samples: 6
Max nTPM: 2950.1
Min nTPM: 1050.8
P10809_1003
2950.1
P10809_1020
1066.6
P10809_1039
1121.8
P10809_1058
1462.2
P10809_1080
1050.8
P10809_1107
1612.5
Intermediate monocyte nTPM: 1209.9
Samples: 6
Max nTPM: 1650.8
Min nTPM: 863.8
P10809_1004
1274.5
P10809_1023
1239.5
P10809_1042
1125.6
P10809_1061
863.8
P10809_1081
1105.3
P10809_1108
1650.8
Non-classical monocyte nTPM: 1074.4
Samples: 5
Max nTPM: 1374.5
Min nTPM: 682.9
P10809_1005
1290.3
P10809_1053
936.5
P10809_1072
682.9
P10809_1082
1087.9
P10809_1109
1374.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
503.4
Monaco sample
nTPM
Classical monocyte nTPM: 344.9
Samples: 4
Max nTPM: 463.4
Min nTPM: 263.6
RHH5313_R3680
463.4
RHH5221_R3593
306.2
RHH5250_R3622
263.6
RHH5279_R3651
346.6
Intermediate monocyte nTPM: 503.4
Samples: 4
Max nTPM: 594.4
Min nTPM: 330.0
RHH5314_R3681
520.7
RHH5222_R3594
568.4
RHH5251_R3623
594.4
RHH5280_R3652
330.0
Non-classical monocyte nTPM: 384.9
Samples: 4
Max nTPM: 479.1
Min nTPM: 231.7
RHH5315_R3682
471.8
RHH5223_R3595
356.9
RHH5252_R3624
479.1
RHH5281_R3653
231.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
321.9
Schmiedel sample id
TPM
Classical monocyte TPM: 321.9
Samples: 91
Max TPM: 401.2
Min TPM: 263.3
MONOCYTES_1
401.2
MONOCYTES_2
385.7
MONOCYTES_3
382.4
MONOCYTES_4
382.2
MONOCYTES_5
377.2
MONOCYTES_6
372.4
MONOCYTES_7
368.2
MONOCYTES_8
365.0
MONOCYTES_9
357.7
MONOCYTES_10
356.7
MONOCYTES_11
353.8
MONOCYTES_12
353.3
MONOCYTES_13
353.0
MONOCYTES_14
352.5
MONOCYTES_15
352.5
MONOCYTES_16
349.7
MONOCYTES_17
348.6
MONOCYTES_18
348.4
MONOCYTES_19
348.0
MONOCYTES_20
347.4
MONOCYTES_21
346.9
MONOCYTES_22
344.5
MONOCYTES_23
343.3
MONOCYTES_24
339.3
MONOCYTES_25
338.8
MONOCYTES_26
335.0
MONOCYTES_27
334.9
MONOCYTES_28
334.6
MONOCYTES_29
332.5
MONOCYTES_30
331.2
MONOCYTES_31
330.5
MONOCYTES_32
330.4
MONOCYTES_33
329.3
MONOCYTES_34
329.0
MONOCYTES_35
329.0
MONOCYTES_36
328.7
MONOCYTES_37
327.5
MONOCYTES_38
325.4
MONOCYTES_39
324.2
MONOCYTES_40
324.0
MONOCYTES_41
322.6
MONOCYTES_42
321.4
MONOCYTES_43
321.3
MONOCYTES_44
320.6
MONOCYTES_45
320.3
MONOCYTES_46
319.4
MONOCYTES_47
319.2
MONOCYTES_48
318.6
MONOCYTES_49
317.8
MONOCYTES_50
317.6
MONOCYTES_51
316.2
MONOCYTES_52
313.6
MONOCYTES_53
313.2
MONOCYTES_54
313.2
MONOCYTES_55
310.9
MONOCYTES_56
309.6
MONOCYTES_57
309.2
MONOCYTES_58
308.1
MONOCYTES_59
307.9
MONOCYTES_60
307.7
MONOCYTES_61
307.5
MONOCYTES_62
306.8
MONOCYTES_63
306.4
MONOCYTES_64
305.5
MONOCYTES_65
304.7
MONOCYTES_66
304.2
MONOCYTES_67
304.0
MONOCYTES_68
303.7
MONOCYTES_69
303.6
MONOCYTES_70
302.9
MONOCYTES_71
302.5
MONOCYTES_72
302.1
MONOCYTES_73
300.4
MONOCYTES_74
298.3
MONOCYTES_75
297.3
MONOCYTES_76
296.9
MONOCYTES_77
296.5
MONOCYTES_78
295.3
MONOCYTES_79
294.2
MONOCYTES_80
289.4
MONOCYTES_81
287.1
MONOCYTES_82
286.3
MONOCYTES_83
282.9
MONOCYTES_84
282.6
MONOCYTES_85
280.3
MONOCYTES_86
278.9
MONOCYTES_87
277.0
MONOCYTES_88
275.4
MONOCYTES_89
271.1
MONOCYTES_90
264.4
MONOCYTES_91
263.3
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Non-classical monocyte TPM: 277.1
Samples: 90
Max TPM: 359.7
Min TPM: 224.5
M2_1
359.7
M2_2
340.0
M2_3
337.6
M2_4
336.6
M2_5
326.0
M2_6
322.0
M2_7
316.7
M2_8
313.4
M2_9
310.7
M2_10
309.2
M2_11
307.9
M2_12
307.2
M2_13
305.2
M2_14
304.6
M2_15
303.5
M2_16
300.1
M2_17
298.8
M2_18
297.0
M2_19
296.8
M2_20
296.4
M2_21
295.2
M2_22
295.2
M2_23
294.0
M2_24
293.5
M2_25
292.8
M2_26
291.7
M2_27
290.5
M2_28
289.3
M2_29
288.6
M2_30
288.6
M2_31
288.2
M2_32
288.1
M2_33
287.8
M2_34
286.9
M2_35
286.1
M2_36
283.6
M2_37
280.7
M2_38
280.5
M2_39
278.5
M2_40
277.7
M2_41
275.9
M2_42
275.7
M2_43
274.7
M2_44
273.9
M2_45
273.2
M2_46
272.6
M2_47
270.8
M2_48
270.5
M2_49
270.4
M2_50
270.0
M2_51
269.9
M2_52
269.9
M2_53
267.3
M2_54
265.8
M2_55
265.0
M2_56
264.9
M2_57
264.4
M2_58
263.3
M2_59
262.2
M2_60
262.1
M2_61
262.0
M2_62
260.9
M2_63
260.8
M2_64
260.7
M2_65
260.6
M2_66
260.3
M2_67
259.9
M2_68
259.4
M2_69
259.4
M2_70
259.1
M2_71
258.2
M2_72
257.4
M2_73
256.7
M2_74
256.7
M2_75
256.0
M2_76
254.9
M2_77
250.6
M2_78
249.4
M2_79
248.0
M2_80
247.9
M2_81
245.6
M2_82
245.5
M2_83
243.7
M2_84
242.3
M2_85
240.9
M2_86
237.6
M2_87
233.9
M2_88
231.2
M2_89
224.7
M2_90
224.5
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